Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 138 9e-28 >seq2 Length=950389 Score = 138 bits (152), Expect = 9e-28 Identities = 273/400 (68%), Gaps = 8/400 (2%) Strand=Plus/Minus Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 |||||| ||||| | ||||| || || || || || ||||| |||||| Sbjct 623842 CACGTAGAACTGCGCAAACATG---TGACAAGGCGGCAGCGCCATCTTCTTCAAGTCGGC 623786 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 ||||||||| |||| || ||||||||| | ||| | ||||| ||| | || || Sbjct 623785 GGGGTTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCGCAGCTTGTGGAC 623726 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164 | | | |||||| || || ||| |||| |||||| | | ||| |||||| Sbjct 623725 GACCTCGGCCAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGTGCGGGCGTCGACGTACTC 623666 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 || ||||| || | |||||||||||||||||| || |||||||| || | || | ||| Sbjct 623665 GGCGCCGAAGTGGCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCGGCCTCGCGGTG 623606 Query 30225 CTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30283 ||| |||| | |||| | || || | || |||||| ||||||||||||| || | Sbjct 623605 GCCGA-GCCCGACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 623547 Query 30284 CCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30343 ||| ||| || ||| || || | || ||||||||||| || ||||| | | Sbjct 623546 CCTGCTCCGACAGCGAGAGCGACGACGTCGCGCCGCTGACGAACCAGAGGAGCTCGGCGA 623487 Query 30344 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 |||||| ||||| | ||||||||| |||||||| Sbjct 623486 GCACGGCCCGGTGGAAGACGCGCTTGGTCGTCAGGAGGGG 623447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615234487175