Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq80 100 2e-16 seq4 100 2e-16 >seq80 Length=149332 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || |||||||| || || || ||||| || || || | || Sbjct 52902 AGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 52843 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| ||||| || || | ||| | ||||||| Sbjct 52842 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 52783 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||||||||| | || Sbjct 52782 TTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTG 52723 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || || || || |||||||| Sbjct 52722 ATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 52685 >seq4 Length=784365 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || |||||||| ||||| || | || Sbjct 46719 AGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTCCGG 46778 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || || || || || ||||| || || | || | |||||| Sbjct 46779 CCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCC 46838 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | ||||| | ||||||||| | || Sbjct 46839 TTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTGTCTGAGGACTCCACCTCTAGTGTT 46898 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||||||||| || || || || |||||||| Sbjct 46899 ATCGTTTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 46936 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| ||||| || || ||| | ||| |||| || Sbjct 46956 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCG 47015 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| ||||| ||||| || || | ||| | |||||||||||| Sbjct 47016 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 47075 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || || | ||| ||||| | || || || || Sbjct 47076 ATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 47135 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||| || ||||| Sbjct 47136 CCAGTGAGGGTCTTGACAAAGATTTGCAT 47164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935394728425