Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq14 235 1e-56 seq88 147 4e-30 >seq14 Length=442650 Score = 235 bits (260), Expect = 1e-56 Identities = 864/1329 (65%), Gaps = 47/1329 (4%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 || ||||| | || ||| || |||| | | ||| | |||||||| |||| ||| Sbjct 87728 CCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCA 87787 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAA 221484 ||||||||||||||||| |||||| ||||| || || | ||||| || || || Sbjct 87788 GCGTGGTAGATGGTCTCGAAGATCTGTTTGTTCAG-CTGGCGAGCCTCAGGGGACTCAAA 87846 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 ||||| || || | ||| | ||||| || ||||| || || | ||| |||||||| Sbjct 87847 TGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGGACACCAACACCAATGGGCCT 87906 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||||| | ||||| | || || |||||| || |||||| || || | || Sbjct 87907 GTGTCGCATGTTGCTGTTGTATGCCTCCTTCACGGGGTAGTGGTTGACATCAATGATCTT 87966 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||| ||||| || || ||| |||| ||| | || ||| | | | || Sbjct 87967 GTTCAGGTTGCGA------AC---AACGACCTGGGTGACCTCGTGGAGGTG---CTGGAA 88014 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 | | || || || | || ||| | || || |||| | ||||||||| || Sbjct 88015 GTTGTAGCAGTTGTTTTCGTAGTCAACATATGCTGGCAGAGCAATGGAGGCCAGGTTGCA 88074 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 || |||||||| || |||| |||||||| || || |||||| || Sbjct 88075 GACAGCCACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCG 88134 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||||| || || || |||||| ||| || |||||||||||||| || Sbjct 88135 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 88194 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 || ||| ||||| ||| ||| | || || || ||| || | |||| || ||| Sbjct 88195 AGGGTTGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCT-TCTGAGCCTTCA 88253 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATAC--CCGGTATAGAGCATGTCAAACT 221960 ||| | | | || ||| ||| | || ||| | ||| ||||| | | |||| Sbjct 88254 TGGTCTTGCGGCC-GCGGCCT---TCTCTCTCGTACTTCTCGTACAGAGCCT--CGAACT 88307 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 |||||||| || | ||||| || ||| | ||| ||||| || |||||| Sbjct 88308 CGTCACCGTAGCAGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGC 88367 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 ||| | | |||| || |||||||||||| || ||||| || || | ||||| || | Sbjct 88368 CGTTCTTCTCAACCCGCTTCATGAAGAGGTCAGGAATCCAGAGAGCAAGGAAGAGGTCGC 88427 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 || || ||||||| |||| ||| || | || || | ||||| || | |||| Sbjct 88428 GGGCTCGGACCTCCTCCTTACCGTGGTTCTTTCGCAAGTCGAGGAACTCGAAGACATCAG 88487 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 ||||||| |||||||| |||| || | ||| || || ||||| || |||||||| | || Sbjct 88488 CGTGCCATGGCTCCAGGTAGATAGCGAAAGCACCAGGACGCTTATTACCACCCTGGT-CA 88546 Query 222201 CCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCG 222259 | | ||| | |||||||| ||||| | || | | ||||| || ||| Sbjct 88547 ACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCGTTTGACGTGCCG 88606 Query 222260 TTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-CAGACATGCCGATA 222316 ||||| || ||||| | || ||| | || ||| ||| | || || ||| Sbjct 88607 TTGGTACCGGCGATGTAAGAGCCAGTGGCAC---GGATACGGTGGACGTTCAGACCAATA 88663 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 || ||||| || |||||||||||||| |||||||||| || ||| || || ||| Sbjct 88664 CCTCCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGAGTATCGTAGATACCTTCAATA 88723 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 ||| ||||| | || | || || || ||||||| ||||| | || | || || Sbjct 88724 CTGTCATCCTTCATGTCGACGAGGAAGCACGACGACAACTGAGGCTGGGGCGTACCAGCA 88783 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496 || ||||| || || ||||| || ||| | |||||||| | ||||||||| Sbjct 88784 TTGAACAGTGTAGGCGATGCGTGCGTGAAGAATTTGTGCGACATCAGGTTGTACGTCTCA 88843 Query 222497 ACGACTCTGGCGATGT--TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACT 222554 | ||||| | || | | ||||| | | || || | |||| ||||| || Sbjct 88844 ATAACTCTCTCAATATCATCTCCCCAGATACCAACA--GCAACACGCATGATCATGTGCT 88901 Query 222555 GGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTC 222610 | |||| || || ||| || | ||||| ||| ||||| || |||| ||| Sbjct 88902 GTGGCCGTTCGAC--GACTTTGCCATCGAGCT--TGAGGAGGTATGACCGCTCCAAGGTC 88957 Query 222611 TTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC 222669 ||||| || ||||| |||| | | ||||||| | | | || | ||| | ||| ||||| Sbjct 88958 TTGAAGCCGAAGTA-TTGATAGCCGAAGTCTCGGTCATATACAATGGCAGAGTCGAGCTC 89016 Query 222670 CGACTTGTG 222678 |||||| Sbjct 89017 GTCCTTGTG 89025 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||||| | | |||||| | |||||| ||| | || Sbjct 87487 GTTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGG 87546 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | ||| ||||| |||||||| |||| Sbjct 87547 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGCGCCAT 87606 Query 221236 CAGCAGACTGTTGCG 221250 || || ||||| || Sbjct 87607 CAACAAGCTGTTTCG 87621 >seq88 Length=140259 Score = 147 bits (162), Expect = 4e-30 Identities = 343/519 (66%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| ||||| | |||||| |||||| |||||||||||| ||| ||| |||| Sbjct 57407 CCCTGCATCCGTAAGAAGGCCGACTGGGCCCTGAAGTGGATCACGGACCACGAGT-CTAC 57349 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 | | |||| ||||| ||||| |||||||| ||||| ||||| ||||||||| | || Sbjct 57348 CTACGCTCAGCGTCTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTT 57289 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||||||||| ||| || || ||||| || ||| ||| |||||||| Sbjct 57288 CGCCTCCATCTTCTGGCTGAAGAAGCGCGGTTTGATGCCTGGTCTGACCTTCTCCAACGA 57229 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||| ||| | ||||||||||| |||| || || || |||||||| | | | || Sbjct 57228 GCTGATCTCTCGTGACGAGGGTCTGCACACTGACTTCGCTTGCCTGCTGTTCTC---TCA 57172 Query 26049 CTTGCTCCACAAACCTTCTC----AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGG 26104 | || | |||| | | | | | ||| | | ||||||| || || || | Sbjct 57171 CCTG----AGGAACCGCCCCAGCAAGGCGCGTGTCGAGAAGATCATCACTGATGCCGTCG 57116 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 || ||||||||||| | ||||||||| || Sbjct 57115 TCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGTCTGCTCGGCATGAACGCCA 57056 Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGC-TGT-GCCAGCTGGGACT 26222 || |||| || ||||| |||| |||||||||| ||| | ||| ||| || || Sbjct 57055 ACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTCCTTGTCGCC--CTTGGCAA 56998 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || | |||||| | | ||||| |||||||| ||||| ||||| || | | || Sbjct 56997 CGAGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGG 56938 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||||| || ||| | ||||| ||||| || Sbjct 56937 CAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 56899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839284984000