Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq27 161 2e-33 seq37 138 2e-26 seq88 125 1e-22 seq14 120 5e-21 seq63 118 2e-20 seq36 107 3e-17 seq139 93.3 7e-13 >seq27 Length=305726 Score = 161 bits (178), Expect = 2e-33 Identities = 351/521 (67%), Gaps = 12/521 (2%) Strand=Plus/Minus Query 2018925 GAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCCGTTGCCTAC 2018984 || || |||||||| | |||||||||||||| ||||||| | | | | | Sbjct 224689 GAGAAATACCGCCCCGTCTTCCTCGACGACATCGTCGGCAACGTCGAGACGATAGAACGC 224630 Query 2018985 CTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGC 2019044 |||||| | ||| ||||||||||||||| || || | | | ||| ||||||| Sbjct 224629 CTCAAGATCATCGCCAAAGACGGCAACATGCCCCACGTCATCATCTCAGGCATGCCCGGC 224570 Query 2019045 ACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGAC 2019104 | |||||||| || ||| | ||||| ||||| ||| |||||| || | | Sbjct 224569 ATCGGCAAGACGACCAGCGTGCTCTGCCTCGCGCGACAACTCCTGGGCGACGCATACAAG 224510 Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 |||||||| || |||||||| ||||| || |||||||| | ||||| ||||| | | Sbjct 224509 GAGGCCGTACTGGAACTCAACGCGTCCGATGAGCGCGGAATAGACGTGGTGCGGAACCGC 224450 Query 2019165 ATCAAGCATCACGCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGA 2019219 |||||| |||||| | ||||| || ||||| ||||| || |||||| | Sbjct 224449 ATCAAG-----GGCTTCGCCCAGAAGAAGGTCACGCTGCCTCCCGGACGGCACAAGATTG 224395 Query 2019220 TCATCCTCGATGAGGCCGACTGCCTTACG-TCGGCGGCCCAGCAGGCCCTCCGATCGACC 2019278 |||||||||| ||||| ||| || | ||| |||| || |||||||| | | ||| Sbjct 224394 TCATCCTCGACGAGGCGGACAGCATGACGAGCGGC-GCGCAGCAGGCTTTGAGGCGGACT 224336 Query 2019279 ATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTC 2019338 ||||| | ||| | || ||||| ||||| || | || |||||| |||| | | || Sbjct 224335 ATGGAGATCTACTCGAATACGACTCGGTTCGCCTTTGCGTGCAACCAGTCGAACAAGATC 224276 Query 2019339 ATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 || || | | ||| || || || ||| |||| | ||| | | || || | |||| Sbjct 224275 ATTGAGCCGTTGCAGTCGCGATGTGCGATCCTGCGGTACGCGAGGTTGACGGATGGCCAG 224216 Query 2019399 ATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 | | ||| || | |||| ||||| || || ||||| Sbjct 224215 GTGGTTAAGCGCCTACTACAGATCATCGAGGCAGAGAAGGT 224175 >seq37 Length=263410 Score = 138 bits (152), Expect = 2e-26 Identities = 201/280 (72%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 || || ||||||||| ||| ||||| | |||||||||| ||| ||||| || Sbjct 254221 AGGTCGATCTTGGAGTTGGCGTCGCTCGACGACATCTTGCCGCCCTGC---AGGCCGGGG 254277 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | | ||| ||||| |||||| |||||| ||||| ||| Sbjct 254278 ACCATGGGGTTCATGATGTGCGCGCGCTGGCGGTACCCCAGCTTGGGCAGCCAGTCCTTG 254337 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 ||| | |||| ||||||||||||| ||||| ||||| |||| |||||||||| | Sbjct 254338 GCAGCCGTGAAGAGCTTGCGCTGGTCGACGCCGCCGAACTGCACGTCCACGTCGAGGTAC 254397 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTC 2411621 ||||||||||| |||||| || ||||||| ||| | || |||| ||| || || Sbjct 254398 TGCTCGTCGAGCACCTGCAGGATGGGGTAGAGCAGGCCGGACAGGGGCGCGTTGGCCGT- 254456 Query 2411622 CATCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGC 2411659 | |||||| |||| |||| |||||| || ||| ||||| Sbjct 254457 CTGCTTGACGACCTCGGCGCCGGCCTTCTTGGCGTCGTGC 254496 >seq88 Length=140259 Score = 125 bits (138), Expect = 1e-22 Identities = 181/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| | | Sbjct 56885 TGACACCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAA 56944 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 56945 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTCTCGTTGCCAA 57004 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | |||| || |||||||| ||||| || |||||||| ||| ||| |||||||| Sbjct 57005 GGGCGACAAGGAGACGGTCGGCCACGAACTCGATGTACTGCTTCATCAGGTTGGCGTTCA 57064 Query 794071 TGCCGATGAG-CGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||| || | || ||| || | |||| | | ||||| ||||| || ||||||| Sbjct 57065 TGCCGAGCAGACTGCA-GGGAAGAGCCTCGGTCAAGAACTCCTTCTCAATGACGACGGCA 57123 Query 794130 TCGATGATGATCT 794142 || ||||||||| Sbjct 57124 TCAGTGATGATCT 57136 >seq14 Length=442650 Score = 120 bits (132), Expect = 5e-21 Identities = 273/412 (66%), Gaps = 10/412 (2%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||||||||||||||||| | || |||| |||||||||| |||||| Sbjct 88101 ACTCGATGATCTCGGTGCACAGGTTGGAG--CTGCGGATGGTTCCCAGGTTCTTCTGGTT 88158 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| | ||||| ||| ||||||| |||||| | || || |||||| |||| || Sbjct 88159 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTGCCGGTCTCGGTCTGGGC 88218 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCT-CG--CGCGGCCCTN 2071748 | || |||||| |||| | | | || || |||| | || ||||||| | Sbjct 88219 CTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCAT---GGTCTTGCGGCCGCGGCCTTC 88275 Query 2071749 NNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGG 2071808 | || || || || || | |||| ||| || ||||| || Sbjct 88276 TCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCAAGGCCAGG 88335 Query 2071809 CGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAG 2071868 |||| ||||| | ||| | |||||||||| || | || || ||| || || Sbjct 88336 GCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAGAG 88395 Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928 ||| |||| || | ||||| ||||| || ||| ||||||||| |||||||| Sbjct 88396 GTCAGGAATCCAGAGAGCAAGGAAGAGGTCGCGGGCTCGGACCTCCTCCTTACCGTGGTT 88455 Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAG 2071980 |||| || |||||| | |||| || || |||||||| |||||||||||| Sbjct 88456 CTTTCGCAAGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAG 88507 Score = 118 bits (130), Expect = 2e-20 Identities = 182/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || || || || |||| ||| ||||| || |||||||| | | ||||| || Sbjct 88540 CTGGTCAACGTAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATACCGTTTGA 88599 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||| || || | ||| | ||| | ||| || | ||| || | || Sbjct 88600 CGTGCCGTTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATACGGTGGACGTTCAGACC 88659 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || |||||| ||||||||| | ||||| | || || || |||||||| || || Sbjct 88660 AATACCTCCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGAGTATCGTAGATACCTTC 88719 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||||||||| || || | | ||| || Sbjct 88720 AATACTGTCATCCTTCATGTCGACGAGGAAGCACGACGACAACTGAGGCTGGGGCGTACC 88779 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 |||||||| || || |||| Sbjct 88780 AGCATTGAACAGTGTAGGCG 88799 >seq63 Length=186541 Score = 118 bits (130), Expect = 2e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035641 ATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTG 2035700 || || || ||||||||| | ||||||||| | || || ||| | || |||||||| || Sbjct 106410 ATTCTTGCTGCCAACTACATGGACATCAAGGCGCTTCTGGATGTCGGCTGCAAGACAGTT 106469 Query 2035701 GCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||| | |||||||||||||| |||||||| || ||||||||||| ||||||| Sbjct 106470 GCCAACATGATCAAGGGCAAGTCTCCCGAGGAGATTCGCAAGACCTTCAACATCA 106524 >seq36 Length=274094 Score = 107 bits (118), Expect = 3e-17 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCG-TCAGACGAGGC 2233149 ||||| || ||||| || |||||||| ||||||||||| ||||| || ||| || || Sbjct 196601 GTCGCATTCCCCACAGAAACCGTCTACGGCCTCGGCGCGGACGCCACGCTCA-CCGCCGC 196659 Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209 |||| || |||||| | |||||||||||| || || |||||||| ||||||||||||| Sbjct 196660 CGTAAAGGGCATCTACGCCGCCAAGGGCCGGCCCTCGGACAACCCGCTCATCGTGCACGT 196719 Query 2233210 G 2233210 | Sbjct 196720 G 196720 >seq139 Length=75861 Score = 93.3 bits (102), Expect = 7e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCC-GG 1485604 |||||||||||| |||| | ||| ||| |||||| || ||| | || || Sbjct 61424 GGTCTGGATCTCTCGGGAGGAGATGGTGGACTTCTTGTT-GTAGGCGGCGAGCTTAGAGG 61482 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| || |||| ||||||||||| || ||||||| ||| ||||| | Sbjct 61483 CCTCGGTGGCGACCCGCTCGAAGATGTCGTTGACGAAAGAGTTCAGGATAGACATGGCAC 61542 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 61543 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 61582 Score = 86.0 bits (94), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 61292 GTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCACCGGGCAG 61351 Query 1485531 GATCAGGCGCAC 1485542 |||||| || || Sbjct 61352 GATCAGACGAAC 61363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916195872083525