Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14 206 3e-48 >seq14 Length=442650 Score = 206 bits (228), Expect = 3e-48 Identities = 934/1465 (64%), Gaps = 23/1465 (2%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || |||||||||| | || | || ||| | ||| Sbjct 87488 TTGACGACCTGGAACTCGCCAGCAAGCACACGTCGCTGGTAGATGTTAGAGGTGTATGGC 87547 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| ||||||||||||| ||||| | Sbjct 87548 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGATGTGGATGCGGTAGGCATGGGCGCCATC 87607 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 ||||| ||||| | ||||| | | ||| || ||||||||| | ||||||||| Sbjct 87608 AACAAGCTGTTTCGGATACCGTGCTCCTTGATCTTTGCCTTCAAAGCATCCCAGTCCCAA 87667 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | || ||| ||| ||||||||| || || ||| ||| | | |||| Sbjct 87668 AGATCAGAAGGCTGGACGCCCCACATGTCATATTGAAGCTGTCCCTGCGAGACGGGGGAT 87727 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCT 147192 || || | || ||| ||||| || || | || || || | || Sbjct 87728 CCCTCGTATGTCTGGTATGGGCCGTCAACCTTGGCGATGTCGCAAGACGCAGTCAAAGCA 87787 Query 147193 CCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAA 147252 | | ||| ||||| ||| ||| |||||||| || | || || | ||| | Sbjct 87788 GCGTGGTAGATGGTCTCGAAGATCTGTTTGTTCAGCTGGCGAGCCTCAGGGGACTCAAAT 87847 Query 147253 GGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGA 147312 ||||| || ||| || ||||||||||| | |||||||| ||| || || || || | Sbjct 87848 GGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGGACACCAACACCAATGGGCCTG 87907 Query 147313 TGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAATAATCTT 147371 || ||||||| | || ||| | | ||| ||||||||| |||||| ||||| Sbjct 87908 TGTCGCATGTTGCTGTTGTATGC-CTCCTTCACGGGGTAGTGGTTGACATCAATGATCTT 87966 Query 147372 GTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA--AGTC 147429 ||| ||||| || || || || | || | | ||| | || ||| | || ||| Sbjct 87967 GTTCAGGTTGCGAACAACGACCTGGGTGACCTCGTGGAGGTGCTGGAAGTTGTAGCAGT- 88025 Query 147430 CCGTCTTCG----ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGC 147485 || |||| || || || ||| || || || || ||||| |||||||| || Sbjct 88026 -TGTTTTCGTAGTCAACATATGC--TGG--CAGAGCAATGGAGGCCAGGTTGCAGACAGC 88080 Query 147486 CGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGAC 147545 | ||| || | | | ||||| | ||| |||| |||||||||| || ||| Sbjct 88081 CACCTCATCAGGAGCACAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGGATGGT 88140 Query 147546 TCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 147605 ||||| || | ||| ||||| || || ||||| || || ||| |||||||| | || Sbjct 88141 TCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTT 88200 Query 147606 GCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGCTCGCACCCGCT 147664 |||||||||| || | || | ||| | || ||| | ||| || || || Sbjct 88201 GCCGGTCTCGGTCTGGGCCTCGAGGAT-GGCGTACCACAGCTTCTGAGCCTTCATGGTCT 88259 Query 147665 GCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGC 147724 || |||||| || | |||||| |||||||| ||| |||||||| ||||||| Sbjct 88260 TGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGC 88319 Query 147725 AATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAA 147784 | || |||||||| || |||| | || ||||| || | ||| | ||| | | || Sbjct 88320 AGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAA 88379 Query 147785 CGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAAT 147844 | || ||| || || || || | ||| || || | || ||||| ||| | | Sbjct 88380 CCCGCTTCATGAAGAGGTCAGGAATCCAGAGAGCAAGGAAGAGGTCGCGGGCTCGGACCT 88439 Query 147845 CCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGT 147903 |||| || ||| | ||| | | | || | | ||| || |||||||| || Sbjct 88440 CCTCCTTACCGTGGTTCTTTCGCAAGTCGAGGAACTCGA-AGACATCAGCGTGCCATGGC 88498 Query 147904 TCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCACC 147960 || | ||||| || | ||||| |||| || || |||||||| || | || | Sbjct 88499 TCCAGGTAGATAGCGAAAGCACCAGGACGCTTATTACCACCCTGGTCAACGTAACGGGCA 88558 Query 147961 ATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTG 148020 ||||||| || || || | |||||| | ||| | | ||||||||||| | Sbjct 88559 GTGTTGTTGAAGACACGAAGCATGGGAATGATACCGTTTGACGTGCCGTTGGTACCGGCG 88618 Query 148021 ATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTT 148080 || | ||| ||| || | ||| ||||| | ||||| || ||| | ||| Sbjct 88619 ATGTAAGAGCCAGTGGCACGGATACGGTGGACGTTCAGACCAATACCTCCGGCCATCTTG 88678 Query 148081 GATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACG 148140 || || |||||| | || |||||| || || || ||||| | || | | Sbjct 88679 GAGATCATGGCGCAAGTCTTGAGAGTATCGTAGATACCTTCAATACTGTCATCCTTCATG 88738 Query 148141 CCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGA 148200 | | | || ||||| ||| || || |||| || || ||| || || || Sbjct 88739 TCGACGAGGAAGCACGACGACAACTGAGGCTGGGGCGTACCAGCATTGAACAGTGTAGGC 88798 Query 148201 CTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCT-TCGAT 148259 |||||||| || ||||| || ||||| | |||||||||||| | ||| || || Sbjct 88799 GATGCGTGCGTGAAGAATTTGTGCGACATCAGGTTGTACGTCTCAATAAC-TCTCTCAAT 88857 Query 148260 GTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAAC 148319 || || || || || | || || ||||||| |||||||||||| |||||| | || Sbjct 88858 ATCATCTCCCCAGATACCAACAGCAACACGCATGATCATGTGCTGTGGCCGTTCGACGAC 88917 Query 148320 TTGATTGTTGATCTTGAGAAGATAT 148344 || | || |||||| || ||| Sbjct 88918 TTTGCCATCGAGCTTGAGGAGGTAT 88942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608370121000