Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq27 187 4e-41
seq14 143 4e-28
seq88 125 1e-22
>seq27
Length=305726
Score = 187 bits (206), Expect = 4e-41
Identities = 313/450 (70%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935
|||||||| ||||| || ||||| | ||| |||| | | |||| |||||| ||
Sbjct 224241 CGCAGGATCGCACATCGCGACTGCAACGGCTCAATGATCTTGTTCGACTGGTTGCACGCA 224300
Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995
| ||| ||||| |||||||| | | | ||||| ||| || | ||||| || ||
Sbjct 224301 AAGGCGAACCGAGTCGTATTCGAGTAGATCTCCATAGTCCGCCTCAAAGCCTGCTGCGC- 224359
Query 332996 GCCGG-CGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054
|||| ||| | || ||| |||||||||||||||| |||||||| || ||| | |||||
Sbjct 224360 GCCGCTCGTCATGCTGTCCGCCTCGTCGAGGATGACAATCTTGTGCCGTCCGGGAGGCAG 224419
Query 333055 ATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTC 333114
||| | ||| |||| | |||||| || ||||| ||||| | ||||||||
Sbjct 224420 CGTGACCTTCTTCTGGGCGAAGCCCTTGATGCGGTTCCGCACCACGTCTATTCCGCGCTC 224479
Query 333115 GTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGC 333174
|| |||||||||||||| || |||||||| | | || | |||| ||| |||||
Sbjct 224480 ATCGGACGCGTTGAGTTCCAGTACGGCCTCCTTGTATGCGTCGCCCAGGAGTTGTCGCGC 224539
Query 333175 CAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTGGG 333234
||||| | ||| || |||||||| |||||||| || | | | || || |||
Sbjct 224540 GAGGCAGAGCACGCTGGTCGTCTTGCCGATGCCGGGCATGCCTGAGATGATGACGTGGGG 224599
Query 333235 CATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGACAAT 333294
|||||||||||| ||| | ||||||| | | | | |||||||||| ||
Sbjct 224600 CATGTTGCCGTCTTTGGCGATGATCTTGAGGCGTTCTATCGTCTCGACGTTGCCGACGAT 224659
Query 333295 GTCGTCGAGCACCATTGGGCGGTACTTTTC 333324
||||||||| | | |||||||| || ||
Sbjct 224660 GTCGTCGAGGAAGACGGGGCGGTATTTCTC 224689
>seq14
Length=442650
Score = 143 bits (158), Expect = 4e-28
Identities = 337/504 (67%), Gaps = 21/504 (4%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | |||||| ||||||| | | ||||||||| ||||| |||||
Sbjct 89025 CACAAGGACGAGCTCGACTCTGCCATTGTATATGACCGAGACTTCGGCTATCAATACTTC 88966
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGAT---ATTGTCGTCGAG 259798
|| | ||||||| ||||| ||||| ||| || |||| | ||||||||
Sbjct 88965 GGCTTCAAGACCTTGGAGCGGTCATACCTCCTCAA---GCTCGATGGCAAAGTCGTCGAA 88909
Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858
||||| ||| | ||| |||||||||| || |||| | |||| | || | ||
Sbjct 88908 CGGCCACAGCACATGATCATGCGTGTTGCTGTTGGTA--TCTGGGGA-GATGATATTGAG 88852
Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918
| | | ||| |||| | |||| |||||||| | || |||||
Sbjct 88851 AGAGTTATTGAG-ACGTACA----ACCTG-------ATGTCGCACAAATTCTTCACGCAC 88804
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| |||| || || || ||||| || ||||| | || ||| ||||||||||| ||
Sbjct 88803 GCATCGCCTACACTGTTCAATGCTGGTACGCCCCAGCCTCAGTTGTCGTCGTGCTTCCTC 88744
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || || || || ||||| || || |||||| ||||| |
Sbjct 88743 GTCGACATGAAGGATGACAGTATTGAAGGTATCTACGATACTCTCAAGACTTGCGCCATG 88684
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
||||||||| |||||| || || ||| | || ||| | || ||| | ||| |
Sbjct 88683 ATCTCCAAGATGGCCGGAGGTATTGGTCTGAACGTCCACCGTATCCGTGCCACTGGCTCT 88624
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | || || ||||||||| ||| ||||| | | ||||||||||| || || |||
Sbjct 88623 TACATCGCCGGTACCAACGGCACGTCAAACGGTATCATTCCCATGCTTCGTGTCTTCAAC 88564
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
|||| || || ||||| ||||||
Sbjct 88563 AACACTGCCCGTTACGTTGACCAG 88540
Score = 109 bits (120), Expect = 8e-18
Identities = 108/137 (79%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| ||||| ||| |||||| | ||||||||||| || | |||| ||||||||||
Sbjct 88236 TGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCTTTCATGCTCTACAAGGAT 88177
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215
||| ||||| | ||||||||| |||||||||| |||| | ||| ||||||||||
Sbjct 88176 GCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAG-CTCCAACCTGTG 88118
Query 262216 CACCGAGATCGTCCAGT 262232
|||||||||| || |||
Sbjct 88117 CACCGAGATCATCGAGT 88101
>seq88
Length=140259
Score = 125 bits (138), Expect = 1e-22
Identities = 234/336 (70%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||| ||||| ||||| ||||||||||||||| ||||||
Sbjct 57807 GATCTGGCAGATGTAC-AAGAAGCATGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACC 57749
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | ||| | | ||||| ||| ||| ||| ||||| | ||||||
Sbjct 57748 TTTCCAAGGACCTGCACGACTGGAGCAACCGCCTGAACGATGACGAAAAGTACTTCATCT 57689
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
| |||| ||||| || ||| || |||||| || || ||||||||||| ||
Sbjct 57688 CTACCATCCTTGCCTTCTT-CGCTGCTTCCGATGGTATTGTCAACGAGAACCTGGTCGAG 57630
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
|| || | |||||||| | || ||||| |||| || ||||| |||||||||
Sbjct 57629 CGTTTCAGCGCCGAGGTCCAGATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATG 57570
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||| ||||| || || ||||| || || |||||||| ||| ||||||| ||
Sbjct 57569 ATGGAGAACATTCACTCCGAGACATACTCCCTGCTCATCGACACATACATCAAGGAGCCT 57510
Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106
| | || | ||| |||| || ||||| |||||
Sbjct 57509 GCCCAG-CGCACCTACCTTTTCAATGCCATTGACAC 57475
Score = 104 bits (114), Expect = 3e-16
Identities = 183/259 (71%), Gaps = 6/259 (2%)
Strand=Plus/Minus
Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577
|| |||||||| || ||||||| || ||||| ||||| | | |||| | || ||
Sbjct 57139 AGAAGATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCC- 57081
Query 1456578 TGGCG-CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCG 1456636
|| | || ||||||||||||||| | || ||| |||||||| || || || ||||
Sbjct 57080 TGCAGTCTGCTCGGCATGAACGCCAAC-CTGATGAAGCAGTACATCGAGTTC-GTGGCCG 57023
Query 1456637 ACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCA 1456696
|||| || || | || || ||| || ||||| |||| | | ||||||| |||
Sbjct 57022 ACCGTCTCCTTGTCGCCCTTGGCAACG-AGAAGGTCTACAAGTCTACCAACCCCTTCGAC 56964
Query 1456697 TGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAG 1456755
| |||||| ||||| || | |||||||||||||| |||||| || || || ||
Sbjct 56963 TTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGAC 56904
Query 1456756 TACGCCAAGGCCGGCGTCA 1456774
||| |||||||| ||||
Sbjct 56903 TACCAGAAGGCCGGTGTCA 56885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177765385376950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |