Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq27 187 4e-41 seq14 143 4e-28 seq88 125 1e-22 >seq27 Length=305726 Score = 187 bits (206), Expect = 4e-41 Identities = 313/450 (70%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 |||||||| ||||| || ||||| | ||| |||| | | |||| |||||| || Sbjct 224241 CGCAGGATCGCACATCGCGACTGCAACGGCTCAATGATCTTGTTCGACTGGTTGCACGCA 224300 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 | ||| ||||| |||||||| | | | ||||| ||| || | ||||| || || Sbjct 224301 AAGGCGAACCGAGTCGTATTCGAGTAGATCTCCATAGTCCGCCTCAAAGCCTGCTGCGC- 224359 Query 332996 GCCGG-CGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 |||| ||| | || ||| |||||||||||||||| |||||||| || ||| | ||||| Sbjct 224360 GCCGCTCGTCATGCTGTCCGCCTCGTCGAGGATGACAATCTTGTGCCGTCCGGGAGGCAG 224419 Query 333055 ATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTC 333114 ||| | ||| |||| | |||||| || ||||| ||||| | |||||||| Sbjct 224420 CGTGACCTTCTTCTGGGCGAAGCCCTTGATGCGGTTCCGCACCACGTCTATTCCGCGCTC 224479 Query 333115 GTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGC 333174 || |||||||||||||| || |||||||| | | || | |||| ||| ||||| Sbjct 224480 ATCGGACGCGTTGAGTTCCAGTACGGCCTCCTTGTATGCGTCGCCCAGGAGTTGTCGCGC 224539 Query 333175 CAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTGGG 333234 ||||| | ||| || |||||||| |||||||| || | | | || || ||| Sbjct 224540 GAGGCAGAGCACGCTGGTCGTCTTGCCGATGCCGGGCATGCCTGAGATGATGACGTGGGG 224599 Query 333235 CATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGACAAT 333294 |||||||||||| ||| | ||||||| | | | | |||||||||| || Sbjct 224600 CATGTTGCCGTCTTTGGCGATGATCTTGAGGCGTTCTATCGTCTCGACGTTGCCGACGAT 224659 Query 333295 GTCGTCGAGCACCATTGGGCGGTACTTTTC 333324 ||||||||| | | |||||||| || || Sbjct 224660 GTCGTCGAGGAAGACGGGGCGGTATTTCTC 224689 >seq14 Length=442650 Score = 143 bits (158), Expect = 4e-28 Identities = 337/504 (67%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | |||||| ||||||| | | ||||||||| ||||| ||||| Sbjct 89025 CACAAGGACGAGCTCGACTCTGCCATTGTATATGACCGAGACTTCGGCTATCAATACTTC 88966 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGAT---ATTGTCGTCGAG 259798 || | ||||||| ||||| ||||| ||| || |||| | |||||||| Sbjct 88965 GGCTTCAAGACCTTGGAGCGGTCATACCTCCTCAA---GCTCGATGGCAAAGTCGTCGAA 88909 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 ||||| ||| | ||| |||||||||| || |||| | |||| | || | || Sbjct 88908 CGGCCACAGCACATGATCATGCGTGTTGCTGTTGGTA--TCTGGGGA-GATGATATTGAG 88852 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918 | | | ||| |||| | |||| |||||||| | || ||||| Sbjct 88851 AGAGTTATTGAG-ACGTACA----ACCTG-------ATGTCGCACAAATTCTTCACGCAC 88804 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || |||| || || || ||||| || ||||| | || ||| ||||||||||| || Sbjct 88803 GCATCGCCTACACTGTTCAATGCTGGTACGCCCCAGCCTCAGTTGTCGTCGTGCTTCCTC 88744 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || || || || ||||| || || |||||| ||||| | Sbjct 88743 GTCGACATGAAGGATGACAGTATTGAAGGTATCTACGATACTCTCAAGACTTGCGCCATG 88684 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| |||||| || || ||| | || ||| | || ||| | ||| | Sbjct 88683 ATCTCCAAGATGGCCGGAGGTATTGGTCTGAACGTCCACCGTATCCGTGCCACTGGCTCT 88624 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || || ||||||||| ||| ||||| | | ||||||||||| || || ||| Sbjct 88623 TACATCGCCGGTACCAACGGCACGTCAAACGGTATCATTCCCATGCTTCGTGTCTTCAAC 88564 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || || ||||| |||||| Sbjct 88563 AACACTGCCCGTTACGTTGACCAG 88540 Score = 109 bits (120), Expect = 8e-18 Identities = 108/137 (79%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| ||| |||||| | ||||||||||| || | |||| |||||||||| Sbjct 88236 TGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCTTTCATGCTCTACAAGGAT 88177 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 ||| ||||| | ||||||||| |||||||||| |||| | ||| |||||||||| Sbjct 88176 GCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAG-CTCCAACCTGTG 88118 Query 262216 CACCGAGATCGTCCAGT 262232 |||||||||| || ||| Sbjct 88117 CACCGAGATCATCGAGT 88101 >seq88 Length=140259 Score = 125 bits (138), Expect = 1e-22 Identities = 234/336 (70%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||| ||||| ||||| ||||||||||||||| |||||| Sbjct 57807 GATCTGGCAGATGTAC-AAGAAGCATGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACC 57749 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | | ||||| ||| ||| ||| ||||| | |||||| Sbjct 57748 TTTCCAAGGACCTGCACGACTGGAGCAACCGCCTGAACGATGACGAAAAGTACTTCATCT 57689 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 | |||| ||||| || ||| || |||||| || || ||||||||||| || Sbjct 57688 CTACCATCCTTGCCTTCTT-CGCTGCTTCCGATGGTATTGTCAACGAGAACCTGGTCGAG 57630 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | |||||||| | || ||||| |||| || ||||| ||||||||| Sbjct 57629 CGTTTCAGCGCCGAGGTCCAGATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATG 57570 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || || ||||| || || |||||||| ||| ||||||| || Sbjct 57569 ATGGAGAACATTCACTCCGAGACATACTCCCTGCTCATCGACACATACATCAAGGAGCCT 57510 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106 | | || | ||| |||| || ||||| ||||| Sbjct 57509 GCCCAG-CGCACCTACCTTTTCAATGCCATTGACAC 57475 Score = 104 bits (114), Expect = 3e-16 Identities = 183/259 (71%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| || ||||||| || ||||| ||||| | | |||| | || || Sbjct 57139 AGAAGATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCC- 57081 Query 1456578 TGGCG-CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCG 1456636 || | || ||||||||||||||| | || ||| |||||||| || || || |||| Sbjct 57080 TGCAGTCTGCTCGGCATGAACGCCAAC-CTGATGAAGCAGTACATCGAGTTC-GTGGCCG 57023 Query 1456637 ACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCA 1456696 |||| || || | || || ||| || ||||| |||| | | ||||||| ||| Sbjct 57022 ACCGTCTCCTTGTCGCCCTTGGCAACG-AGAAGGTCTACAAGTCTACCAACCCCTTCGAC 56964 Query 1456697 TGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAG 1456755 | |||||| ||||| || | |||||||||||||| |||||| || || || || Sbjct 56963 TTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGAC 56904 Query 1456756 TACGCCAAGGCCGGCGTCA 1456774 ||| |||||||| |||| Sbjct 56903 TACCAGAAGGCCGGTGTCA 56885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177765385376950