Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 seq14 91.5 1e-13 >seq4 Length=784365 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || ||||||||||| | Sbjct 46710 CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 46769 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | ||| || || ||| | ||||||||||| || || || || Sbjct 46770 AGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 46829 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| | |||| | | || | ||||||| || || || Sbjct 46830 ATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTGTCTGAGGACTCCACC 46889 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| ||||| | ||| ||||||| || || || ||||| |||||| Sbjct 46890 TCTAGTGTTATCGTTTTTCCCGTCAATGTCTTGACGAAGATCTGCATA 46937 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| ||||||||| || | || |||| ||| Sbjct 46956 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCGTCCTCG 47015 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | || || ||||| || || || || | ||||| || || | Sbjct 47016 AGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 47075 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | |||||| | || || || || ||||| || | ||| Sbjct 47076 ATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 47135 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||||||||||||| Sbjct 47136 CCAGTGAGGGTCTTGACAAAGATTTGCATA 47165 >seq14 Length=442650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 279/431 (65%), Gaps = 3/431 (1%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 || || ||| |||| ||||| || | ||| ||||||||| ||||| |||||||| || Sbjct 88334 GGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATGAAG 88393 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | || || | ||| | || || || || | ||| ||| || |||| Sbjct 88394 AGGTCAGGAATCCAGAGAGCAAGGAAGAGGTCGCGGGCTCGGACCTCCTCCTTACCGTGG 88453 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 | ||| ||| | | || || || | || || ||||| || |||| || | || Sbjct 88454 TTCTTTCGCAAGTCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCCAGGTAGATAGCG 88513 Query 131783 ATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839 | || || |||||| || || || | ||| | ||| | |||||||| | || Sbjct 88514 AAAGCACCAGGACGCTTATTACCACCCTGGTCAACGTAACGGGCAGTGTTGTTGAAGACA 88573 Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTG 131899 || | |||||| | |||||| | | || ||||| | ||||| |||| || Sbjct 88574 CGAAGCATGGGAATGATACCGTTTGACGTGCCGTTGGTACCGGCGATGTAAGAGCCAGTG 88633 Query 131900 GCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCAT 131959 || | ||| ||| ||||| || |||||||||||| | || ||||| | ||||| Sbjct 88634 GCACGGATACGGTGGACGTTCAGACCAATACCTCCGGCCATCTTGGAGATCATGGCGCAA 88693 Query 131960 TTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAA 132019 | | ||||| | ||||||||||| | ||||| | |||||||| | ||||| Sbjct 88694 GTCTTGAGAGTATCGTAGATACCTTCAATACTGTCATCCTTCATGTCGACGAGGAAGCAC 88753 Query 132020 GAGGACAACTG 132030 || |||||||| Sbjct 88754 GACGACAACTG 88764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931940028200