Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq90 145 2e-29 seq4 120 9e-22 seq47 102 2e-16 >seq90 Length=136398 Score = 145 bits (160), Expect = 2e-29 Identities = 536/832 (64%), Gaps = 7/832 (1%) Strand=Plus/Plus Query 349268 ATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAG 349327 ||||| || || || |||||| | |||||||| || | |||||| || ||||| |||||| Sbjct 105223 ATTGCCAACGACCAGGGTAACCGCACAACGCCTTCTTTCGTTGCTTTCACCGACACTGAG 105282 Query 349328 CGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTT 349387 ||| |||| || ||| | || || || || | ||| || || | || || || || Sbjct 105283 CGTTTGATCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCCCACAACACCGTCTTC 105342 Query 349388 GATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCTAAA 349446 ||||| ||||| | |||||| | ||||| || ||| || | || | || Sbjct 105343 GATGCGAAGCGGTTGATTGGTCGCAAGTTCCTC-GACCCTGAGGTTCAGGCCGACATGAA 105401 Query 349447 ACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATA 349506 || || || || | ||| | | | ||| |||| ||| || |||||||| || | Sbjct 105402 GCACTTCCCCTTCAAGGTTAT-CGACAAG--GGTGGTAAGCCTGCCATTGAGGTCGAGTT 105458 Query 349507 TAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAA 349565 || || || || || || | | || || || || || || ||||| | || | Sbjct 105459 CAAGGGCGAGACCAAGACCTTCACT-CCGGAGGAGATCTCCTCCATGGTCCTGACCAAGA 105517 Query 349566 TGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTAC 349625 || || | ||||| ||||| | |||| || || | | ||||| | || || | Sbjct 105518 TGCGTGAGACCGCTGAGGCATACCTGGGTGGCACCGTTAACAACGCTGTCGTCACCGTTC 105577 Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685 | ||||| || || || | |||||| || || || || || || |||||| || Sbjct 105578 CTGCCTACTTCAACGACTCTCAGCGTCAAGCCACTAAGGACGCCGGTCTCATTGCTGGCC 105637 Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745 | || ||||| | || || || || || || || || || || || || || || || | Sbjct 105638 TGAACGTTCTCCGTATCATCAACGAGCCTACCGCCGCTGCTATCGCTTACGGTCTCGACA 105697 Query 349746 AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATG 349805 | | | || || || | || || || ||| | ||||||||||| || |||| Sbjct 105698 AGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTGGGTGGTGGTACCTTCGATG 105757 Query 349806 TATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACAC 349865 | || || || || | || ||||| || || || || || | || || ||||| || | Sbjct 105758 TGTCCCTGCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTC 105817 Query 349866 ATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGC 349925 | | ||||| || || || || || |||||||| || || || || ||||| || | Sbjct 105818 ACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTGAACGAATTCAAAC 105877 Query 349926 GTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGT 349985 | || ||| | || | || || | || ||||||| || | ||||| | Sbjct 105878 GCAAACATAAGAAGGACTTGTCTTCCAACCCCCGTGCTCTGCGTCGTCTCCGCACTGCTT 105937 Query 349986 GTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTC 350045 | || ||||||||||| | | || ||| | | || ||||| || || || || || | Sbjct 105938 GCGAGCGTGCTAAGCGAACTCTGTCCTCTTCCGCTCAGACCTCCATCGAGATCGACTCCC 105997 Query 350046 TTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 | || || | || |||| | || || || |||||||| || || || Sbjct 105998 TGTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGTTTCGAGGA 106049 >seq4 Length=784365 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||||||||| || ||||| || || || Sbjct 46934 CATACCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 46993 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || ||||| |||||||| || || ||||| || || Sbjct 46994 GGACAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGG 47053 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 47054 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTC 47113 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || ||||| || ||||| Sbjct 47114 GACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 47164 >seq47 Length=232334 Score = 102 bits (112), Expect = 2e-16 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | ||| || || ||| ||||| |||| | || || ||||| Sbjct 70167 ATCTTCAAGCGCCTTGACAAGGCGGCGCTGAATGTAACCTGTTTCAGCGGTCTTGACTGC 70108 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| ||||| | |||||| |||| || |||||||| ||||| || || || || Sbjct 70107 AGTATCAATCAAACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTCGGTGGGTGTCAG 70048 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || | || | ||||| | || | || || | ||||| || || Sbjct 70047 ACCACGGAGGTAAGAGTTTTCGACGAATCCACGAGCTTCCGGTGAGTAATCATCCTTGGT 69988 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||| | || || | || || || | ||||| || ||||| |||||| ||| Sbjct 69987 GAAGTGAGGCAGAGTTCGGTACTTGAAGCCGAAGGGAATACGCTTTCCCTCAACAACCTG 69928 Query 378441 TTGACC 378446 |||||| Sbjct 69927 TTGACC 69922 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | || || ||| || || || ||||||| || ||||| || || Sbjct 70931 CGAGGCACACCAAGCGTGACGTTC---TTGGAGGCCACACCAGTGAAATGGAAGGTGTTG 70875 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | ||||||||||| ||||| || |||| || |||||||| || Sbjct 70874 AGCGTCATCTGCGTCGCAGGCTCACCAATGGACTGAGCCGCAAGCACTCCAACCATCTCG 70815 Query 377578 CCAGGATTGACAATAG 377593 ||||| ||||| |||| Sbjct 70814 CCAGGGTTGACCATAG 70799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245178256425