Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq90 145 2e-29
seq4 120 9e-22
seq47 102 2e-16
>seq90
Length=136398
Score = 145 bits (160), Expect = 2e-29
Identities = 536/832 (64%), Gaps = 7/832 (1%)
Strand=Plus/Plus
Query 349268 ATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAG 349327
||||| || || || |||||| | |||||||| || | |||||| || ||||| ||||||
Sbjct 105223 ATTGCCAACGACCAGGGTAACCGCACAACGCCTTCTTTCGTTGCTTTCACCGACACTGAG 105282
Query 349328 CGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTT 349387
||| |||| || ||| | || || || || | ||| || || | || || || ||
Sbjct 105283 CGTTTGATCGGAGATGCCGCCAAGAACCAGGTCGCTATGAACCCCCACAACACCGTCTTC 105342
Query 349388 GATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCTAAA 349446
||||| ||||| | |||||| | ||||| || ||| || | || | ||
Sbjct 105343 GATGCGAAGCGGTTGATTGGTCGCAAGTTCCTC-GACCCTGAGGTTCAGGCCGACATGAA 105401
Query 349447 ACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATA 349506
|| || || || | ||| | | | ||| |||| ||| || |||||||| || |
Sbjct 105402 GCACTTCCCCTTCAAGGTTAT-CGACAAG--GGTGGTAAGCCTGCCATTGAGGTCGAGTT 105458
Query 349507 TAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAA 349565
|| || || || || || | | || || || || || || ||||| | || |
Sbjct 105459 CAAGGGCGAGACCAAGACCTTCACT-CCGGAGGAGATCTCCTCCATGGTCCTGACCAAGA 105517
Query 349566 TGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTAC 349625
|| || | ||||| ||||| | |||| || || | | ||||| | || || |
Sbjct 105518 TGCGTGAGACCGCTGAGGCATACCTGGGTGGCACCGTTAACAACGCTGTCGTCACCGTTC 105577
Query 349626 CAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT 349685
| ||||| || || || | |||||| || || || || || || |||||| ||
Sbjct 105578 CTGCCTACTTCAACGACTCTCAGCGTCAAGCCACTAAGGACGCCGGTCTCATTGCTGGCC 105637
Query 349686 TAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATA 349745
| || ||||| | || || || || || || || || || || || || || || || |
Sbjct 105638 TGAACGTTCTCCGTATCATCAACGAGCCTACCGCCGCTGCTATCGCTTACGGTCTCGACA 105697
Query 349746 AAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATG 349805
| | | || || || | || || || ||| | ||||||||||| || ||||
Sbjct 105698 AGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTGGGTGGTGGTACCTTCGATG 105757
Query 349806 TATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACAC 349865
| || || || || | || ||||| || || || || || | || || ||||| || |
Sbjct 105758 TGTCCCTGCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTC 105817
Query 349866 ATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGC 349925
| | ||||| || || || || || |||||||| || || || || ||||| || |
Sbjct 105818 ACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTGAACGAATTCAAAC 105877
Query 349926 GTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGT 349985
| || ||| | || | || || | || ||||||| || | ||||| |
Sbjct 105878 GCAAACATAAGAAGGACTTGTCTTCCAACCCCCGTGCTCTGCGTCGTCTCCGCACTGCTT 105937
Query 349986 GTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTC 350045
| || ||||||||||| | | || ||| | | || ||||| || || || || || |
Sbjct 105938 GCGAGCGTGCTAAGCGAACTCTGTCCTCTTCCGCTCAGACCTCCATCGAGATCGACTCCC 105997
Query 350046 TTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097
| || || | || |||| | || || || |||||||| || || ||
Sbjct 105998 TGTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGTTTCGAGGA 106049
>seq4
Length=784365
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || ||||||||||| || ||||| || || ||
Sbjct 46934 CATACCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTC 46993
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || ||||| |||||||| || || ||||| || ||
Sbjct 46994 GGACAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGG 47053
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 47054 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTC 47113
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || ||||| || |||||
Sbjct 47114 GACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 47164
>seq47
Length=232334
Score = 102 bits (112), Expect = 2e-16
Identities = 170/246 (69%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260
|||||| | || || | ||| || || ||| ||||| |||| | || || |||||
Sbjct 70167 ATCTTCAAGCGCCTTGACAAGGCGGCGCTGAATGTAACCTGTTTCAGCGGTCTTGACTGC 70108
Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320
||||||||| ||||| | |||||| |||| || |||||||| ||||| || || || ||
Sbjct 70107 AGTATCAATCAAACCTTCTCGACCAGCCATGGCGTGGAAGAAGAATTCGGTGGGTGTCAG 70048
Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380
|||| | | || | || | ||||| | || | || || | ||||| || ||
Sbjct 70047 ACCACGGAGGTAAGAGTTTTCGACGAATCCACGAGCTTCCGGTGAGTAATCATCCTTGGT 69988
Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440
| ||||| | || || | || || || | ||||| || ||||| |||||| |||
Sbjct 69987 GAAGTGAGGCAGAGTTCGGTACTTGAAGCCGAAGGGAATACGCTTTCCCTCAACAACCTG 69928
Query 378441 TTGACC 378446
||||||
Sbjct 69927 TTGACC 69922
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/136 (74%), Gaps = 3/136 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| ||||||||| | || || ||| || || || ||||||| || ||||| || ||
Sbjct 70931 CGAGGCACACCAAGCGTGACGTTC---TTGGAGGCCACACCAGTGAAATGGAAGGTGTTG 70875
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || || | ||||||||||| ||||| || |||| || |||||||| ||
Sbjct 70874 AGCGTCATCTGCGTCGCAGGCTCACCAATGGACTGAGCCGCAAGCACTCCAACCATCTCG 70815
Query 377578 CCAGGATTGACAATAG 377593
||||| ||||| ||||
Sbjct 70814 CCAGGGTTGACCATAG 70799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515245178256425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |