Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 313 3e-80 seq35 152 6e-32 >seq14 Length=442650 Score = 313 bits (346), Expect = 3e-80 Identities = 492/700 (70%), Gaps = 6/700 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | ||| || || | ||| |||||||| |||| || |||||||| Sbjct 88843 TGAGACGTACAACCTGATGTCGCACAAATTCTTCACGCACGCATCGCCTACACTGTTCAA 88784 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| || |||||| ||||| |||||||| || | |||||||||||| Sbjct 88783 TGCTGGTACGCCCCAGCCTCAGTTGTCGTCGTGCTTCCTCGTCGACATGAAGGATGACAG 88724 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || |||||||| || |||||| || ||| ||||||||| | | || || Sbjct 88723 TATTGAAGGTATCTACGATACTCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGAGG 88664 Query 53422 TATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| ||| | || || | ||| |||||| | ||| | ||| || || ||| Sbjct 88663 TATTGGTCTGAACG--TCCACCGTATCCGTGCCACTGGCTCTTACATCGCCGGTACCAAC 88606 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 ||| | | || ||| | || ||||| || |||||||||||||| ||||| ||||| Sbjct 88605 GGCACGTCAAACGGTATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCCGTTACGTT 88546 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 ||||||||||| ||||| || | ||||| |||||||| ||||| |||||||| Sbjct 88545 GACCAGGGTGGTAATAAGCGTCCTGGTGCTTTCGCTATCTACCTGGAGCCATGGCACGCT 88486 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 || | | ||||| ||||| |||| ||| || ||| | || ||| | || ||| Sbjct 88485 GATGTCTTCGAGTTCCTCGACTTGCGAAAGAACCACGGTAAGGAGGAGGTCCGAGCCCGC 88426 Query 53660 GACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 ||||| || ||||| |||||||| |||||||||||| | ||| |||||| ||| Sbjct 88425 GACCTCTTCCTTGCTCTCTGGATTCCTGACCTCTTCATGAAGCGGGTTGAGAAGAACGGC 88366 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGA 53778 || ||| ||| |||||||| ||||||||||| |||| | | | || ||||||||| || Sbjct 88365 GACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGCCTTGCTGACTG-CTACGGTGACGA 88307 Query 53779 GTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 ||| | | |||| || ||||| | |||||| | |||| | ||||| Sbjct 88306 GTTCGAGGCTCTGTACGAGAAGTACGAGAGAGAAGGCCGCGGCCGCAAGACCATGAAGGC 88247 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 | || | ||| | || |||||| || |||| ||||| || | || | |||| Sbjct 88246 TCAGAAGCTGTGGTACGCCATCCTCGAGGCCCAGACCGAGACCGGCAACCCTTTCATGCT 88187 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||||| | |||| |||||||||||||||||| Sbjct 88186 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAAC 88147 Score = 105 bits (116), Expect = 7e-18 Identities = 295/437 (68%), Gaps = 23/437 (5%) Strand=Plus/Minus Query 55500 TGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGC 55559 ||||||| ||||| ||||| || || | ||||| |||||||||||||| ||||||| Sbjct 87605 TGGCGCCCATGCCTACCGCATCCACATCGCAGATTCTGGGCAACAACGAGTGCTTCGAGC 87546 Query 55560 CGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACA 55619 | ||||| | |||||||||| ||| || || || || ||||| || | || || Sbjct 87545 CATACACCTCTAACATCTACCAGCGACGTGTGCTTGCTGGCGAGTTC--CAGG-TCGTCA 87489 Query 55620 AGCAC---CTCGTCAAGGACCTG-CAGAAGATCAACAAGTGGAACCCGCAGATCAAGA-- 55673 | | | || ||| ||||||| |||| ||| |||| | || |||| Sbjct 87488 ACCCCTGGCTACTCAGGGACCTGACAGA-GATTGGTCTGTGGTCTGAGGCTATGAAGAAC 87430 Query 55674 CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCG-TCTCA 55730 || || | ||| ||| | || || ||||||| || || ||| || | ||| Sbjct 87429 CGTATCAT-TGCCGAA-GATGGTTCTATCCAGAACATCCCCAGCATCCCGGCCGATATCA 87372 Query 55731 AGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGAGTG 55787 ||| | ||| ||| || ||||| | | |||| || ||||| | ||| || Sbjct 87371 AGGCTTTGTACAAGACCGTCTGGGAAGTCTCTCAGAGGAC---GATTGTGCAGATGTCTG 87315 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||| || ||||| | |||||||||||| |||||||| |||||| |||| | || Sbjct 87314 CTGACCGCGGTGCCTTCATCGACCAGTCGCAGTCTCTCAACATCCACATGCGTGAGCCCA 87255 Query 55848 CACTGGCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | || | |||||||| ||| |||||| ||| |||||||| || Sbjct 87254 CGATGGGCAAGATCA-CTAGCATGCACTTCACCGGCTGGAAGCTGGGTCTCAAGACTGGC 87196 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 87195 ATGTACTACCTCCGCAC 87179 >seq35 Length=278380 Score = 152 bits (168), Expect = 6e-32 Identities = 202/280 (72%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 || || ||||||||||||| ||| |||| ||| | ||||| |||||||| | |||||| Sbjct 230226 CGGGTAAAAATGTAACGAGCGCTGGCAGAATCGCTACCACCCGCAAGACGAGAACCGAAG 230167 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | || || || |||| || || | |||||| | ||| ||||||||||| |||||| Sbjct 230166 TTACCGCTGGGTTCCAGGATATTTATGTTGTTCGAGCCTACAAAGTTTTGGGCCAAGCCA 230107 Query 117422 ACAATCGTACCTTG----GAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 | ||||| || ||| || ||||| ||||| || || ||||| || | | Sbjct 230106 ATGATCGTTTGCTGCAAAGAGACT----TCACCGTGGTGGTAAGCTGTCTGTTCGGAGAT 230051 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 ||| || |||| || | | |||||| ||||| |||| ||| ||||| |||||| || Sbjct 230050 GTAACCGGCCAACTCAACGACCTTCTTGTCTTTGGTCAAGTTACGCTTGAAGCAGGCGTA 229991 Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACG 117577 ||| || || | ||||| ||| |||||||| ||| | ||| Sbjct 229990 AATGACTTTCCTCTGACCTGGTTTCAGACCGTCCACAACG 229951 Score = 147 bits (162), Expect = 2e-30 Identities = 224/319 (70%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 151998 GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATC 152057 ||| ||||||| | | |||| |||||| || || ||||| || | |||||| | ||| Sbjct 230254 GAAAATCCGTCTGGCGAAAGGAGACAAACGGGTAAAAATGTAACGAGCGCTGGCAGAATC 230195 Query 152058 CTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTT 152117 | ||||| || || || | || || | || ||| || |||| || | |||||| Sbjct 230194 GCTACCACCCGCAAGACGAGAACCGAAGTTACCGCTGGGTTCCAGGATATTTATGTTGTT 230135 Query 152118 GGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTG 152177 | ||| || || || || ||||| | ||||| ||||| | |||||||||| Sbjct 230134 CGAGCCTACAAAGTTTTGGGCCAAGCCAATGATCGTTTGCTGCAAAGAGACTTCACCGTG 230075 Query 152178 GTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGT 152237 ||| || || ||||| || | |||||| || ||||||| | |||||| |||| | || Sbjct 230074 GTGGTAAGCTGTCTGTTCGGAGATGTAACCGGCCAACTCAACGACCTTCTTGTCTTTGGT 230015 Query 152238 CAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCAC 152297 || ||| ||||| ||||||||||| || || | ||| |||||||| ||||||||| Sbjct 230014 CAAGTTACGCTTGAAGCAGGCGTAAATGACTTTCCTCTGACCTGGTTTCAGACCGTCCAC 229955 Query 152298 CACGTGAGGAATCGAACGC 152316 ||| ||||| || ||| Sbjct 229954 AACGGATGGAATGGATCGC 229936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212750905000