Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2 138 9e-28 >seq2 Length=950389 Score = 138 bits (152), Expect = 9e-28 Identities = 273/400 (68%), Gaps = 8/400 (2%) Strand=Plus/Minus Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 |||||| ||||| | ||||| || || || || || ||||| |||||| Sbjct 623842 CACGTAGAACTGCGCAAACATG---TGACAAGGCGGCAGCGCCATCTTCTTCAAGTCGGC 623786 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 ||||||||| |||| || ||||||||| | ||| | ||||| ||| | || || Sbjct 623785 GGGGTTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCGCAGCTTGTGGAC 623726 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237 | | | |||||| || || ||| |||| |||||| | | ||| |||||| Sbjct 623725 GACCTCGGCCAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGTGCGGGCGTCGACGTACTC 623666 Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297 || ||||| || | |||||||||||||||||| || |||||||| || | || | ||| Sbjct 623665 GGCGCCGAAGTGGCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCGGCCTCGCGGTG 623606 Query 30298 CTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30356 ||| |||| | |||| | || || | || |||||| ||||||||||||| || | Sbjct 623605 GCCGA-GCCCGACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 623547 Query 30357 CCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30416 ||| ||| || ||| || || | || ||||||||||| || ||||| | | Sbjct 623546 CCTGCTCCGACAGCGAGAGCGACGACGTCGCGCCGCTGACGAACCAGAGGAGCTCGGCGA 623487 Query 30417 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||||| ||||| | ||||||||| |||||||| Sbjct 623486 GCACGGCCCGGTGGAAGACGCGCTTGGTCGTCAGGAGGGG 623447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308047843700