Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq4 100 2e-16
seq80 84.2 1e-11
>seq4
Length=784365
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || || || |||||| || || || || || || || || ||
Sbjct 46719 AGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTCCGG 46778
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | || || || || || || | |||||| ||||| || || | |||||||
Sbjct 46779 CCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCC 46838
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| |||||| | |||||| || | ||
Sbjct 46839 TTGTCCTGGATC-TTGCTCTTCACGTTGTCAATGGTGTCTGAGGACTCCACCTCTAGTGT 46897
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||||| || || || || || || || ||||||||
Sbjct 46898 TATCGTTTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 46936
Score = 91.5 bits (100), Expect = 9e-14
Identities = 164/237 (69%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||| | || | || || ||| |||||| || ||||| || || ||
Sbjct 47166 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 47225
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| ||||| || || |||||||| || | ||||| ||||| || ||
Sbjct 47226 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 47285
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| || | || ||| | || ||||| ||||||
Sbjct 47286 ATTCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 47344
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715
|| | ||| || || || ||||| | || || || || ||||||||| ||| |||
Sbjct 47345 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGGTGACTGT 47401
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | ||||| |||||||| |||||| |||||||| || || ||
Sbjct 46938 CCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 46997
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || |||||||| || | ||||| ||||| || ||
Sbjct 46998 AGAGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 47057
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 47058 ATGCCCTCCTTGTCCTGGATCTT 47080
>seq80
Length=149332
Score = 84.2 bits (92), Expect = 1e-11
Identities = 154/223 (69%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||||||| | || || ||||||||||| || ||||| || || || || || ||
Sbjct 52902 AGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 52843
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || | ||||| ||||| || || | ||||||
Sbjct 52842 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 52783
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || || | || ||||| | |||||| || | |||
Sbjct 52782 TTGTC-CTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGT 52724
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || || || | || || || || ||||||||| ||
Sbjct 52723 GATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 52681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727778010675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |