Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 >seq4 Length=784365 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || |||||| | || |||||||| || || | ||| Sbjct 47164 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 47105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 47104 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 47045 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||| || || | || ||| || || | ||||| |||||| Sbjct 47044 CAGCGCCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTGTCCGACTACAAC 46985 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || |||||| | || | || ||||| || Sbjct 46984 ATTCAGAAGGAGTCTACTCTCCACTTGGTTCTCCGCCTTCGTGGTGGTAT 46935 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || || | || || || || ||||| | || Sbjct 46936 ATGCAGATCTTCGTCAAGACATTGACGGGAAAAACGATAACACTAGAGGTGGAGTCCTCA 46877 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || || || ||||| || || Sbjct 46876 GACACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 46817 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || |||||||| | ||| | || || ||||| Sbjct 46816 CAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCCGGACGCTGTCTGACTACAAT 46757 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | || ||||| | ||| |||| ||||| Sbjct 46756 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 46710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915817672000