Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=950389 Score = 105 bits (116), Expect = 6e-18 Identities = 234/343 (68%), Gaps = 10/343 (3%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || || |||||||| || || || | | || |||| ||| ||||| || |||||| Sbjct 623447 CCCCTCCTGACGACCAAGCGCGTCTTCCACCGGGCCGTGCTCGCCGAGCTCCTCTGGTTC 623506 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || || || || ||| | ||| ||| | ||| || ||||||||||||| Sbjct 623507 GTCAGCGGCGCGACGTCGTCGCTCTCGCTGTCGGAGCAGGGCGTCAAGATCTGGGACGGC 623566 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGG-GGGTTC--CCATCTCGGGAGGAGGGCGAC 34399 |||| || || || || || |||| ||| ||| || ||| | || ||| |||||| Sbjct 623567 AACGGCTCGCGCGAGTTCCTCGACA-GCGTCGGGCTCGGCCACCGCG--AGGCCGGCGAC 623623 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA--TCGGGGGAGCG 34457 ||||||| || ||||||||||||||| | ||||| || || ||||| || | | || Sbjct 623624 CTGGGCCCCGTGTACGGGTTCCAGTGGCGCCACTTCGGCGCCGAGTACGTC-GACGCCCG 623682 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 | | ||||| |||| ||||| | ||||||||| | || || ||| || | Sbjct 623683 CA-CCGACTACACGGGCCAGGGCGTCGACCAGCTGGCCGAGGTCGTCCACAAGCTGCGGA 623741 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 |||||| | ||| | | ||| | ||| ||||||||||||| Sbjct 623742 CGAACCCGTACGACCGCCGCATCATCATGAGCGCGTGGAACCC 623784 Score = 105 bits (116), Expect = 6e-18 Identities = 234/343 (68%), Gaps = 10/343 (3%) Strand=Plus/Minus Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 ||||||||||||| ||| | ||| | | ||| | |||||| | || ||| || Sbjct 623784 GGGTTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCGCAGCTTGTGGACG 623725 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA--TACT 6902 || | ||||||||| | ||||| |||| ||||| | | || | | || |||| Sbjct 623724 ACCTCGGCCAGCTGGTCGACGCCCTGGCCCGTGTAGTCGG-TGCGGGCGTC-GACGTACT 623667 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 | || || ||||| | ||||||||||||||| || ||||||| |||||| ||| || | Sbjct 623666 CGGCGCCGAAGTGGCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCGGCCT--CGCG 623609 Query 6963 ATGG--GAACCC-CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA 7019 ||| || ||| ||| |||| || || || || || |||| ||||||||||||| | Sbjct 623608 GTGGCCGAGCCCGACGC-TGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGA 623550 Query 7020 CCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCT 7079 | ||| | ||| ||| | ||| || || || |||||||| || ||||| Sbjct 623549 CGCCCTGCTCCGACAGCGAGAGCGACGACGTCGCGCCGCTGACGAACCAGAGGAGCTCGG 623490 Query 7080 CGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||| |||| || | | || || || |||||||| || || Sbjct 623489 CGAGCACGGCCCGGTGGAAGACGCGCTTGGTCGTCAGGAGGGG 623447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259738442000