Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4 140 8e-28
seq5 120 7e-22
seq80 116 9e-21
seq14 96.9 8e-15
>seq4
Length=784365
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| |||||| || | || || | ||||||
Sbjct 46725 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTCCGGCCATCT 46784
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| ||||||||||| || || || ||||| || || || || ||||||||
Sbjct 46785 TCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 46844
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| || ||||||||||||| ||||| |||| || |||||
Sbjct 46845 TGGATCTTGCTCTTCACGTTGTCAATGGTGTCTGAGGACTCCACCTCTAGTGTTATCGTT 46904
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| |||||||| || || | ||| | |||||
Sbjct 46905 TTTCCCGTCAATGTCTTGACGAAGATCTGCAT 46936
>seq5
Length=773751
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| || || | ||||| || |||||||| || ||||||||
Sbjct 717619 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 717560
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || ||||| || || || || |||||||| |||||||| ||| ||| |||
Sbjct 717559 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 717500
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 717499 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 717441
>seq80
Length=149332
Score = 116 bits (128), Expect = 9e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | || || ||||| || ||| || || |||| ||||| |||| | ||
Sbjct 52906 ACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGT 52847
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| || || || |||||||| || || ||
Sbjct 52846 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 52787
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| ||| ||||||||||| |||| ||||| || |
Sbjct 52786 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAG 52727
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||| | || || | ||| | |||||
Sbjct 52726 GGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 52685
>seq14
Length=442650
Score = 96.9 bits (106), Expect = 8e-15
Identities = 178/261 (68%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 193489 TTCCCGTGTGTTTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCA 193548
||||| || ||||||||| |||| || | ||| || ||||||| ||||| ||
Sbjct 88140 TTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGT 88199
Query 193549 TGCCCACCTCCGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCG 193608
|||| ||| | || || |||| ||| | ||| || | ||||| |||| |||
Sbjct 88200 TGCCGGTCTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCATGGTCT 88259
Query 193609 TTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGA 193668
| | | | ||||| ||||||||||| |||||||| |||| || || | ||||||
Sbjct 88260 TGCGGCCGCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGC 88319
Query 193669 TTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCA 193728
|| | || || || || || ||||| | ||| |||| || || | | || |
Sbjct 88320 AGTCAGCAAGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAA 88379
Query 193729 CCCTCTTCATGAAGAGGTCAG 193749
||| |||||||||||||||||
Sbjct 88380 CCCGCTTCATGAAGAGGTCAG 88400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192523942329650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |