Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq26 82.4 6e-11 >seq2 Length=950389 Score = 127 bits (140), Expect = 2e-24 Identities = 239/349 (68%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 27375 CAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 |||||| ||||||||| |||| || ||||||||| | ||| | ||||| ||| | Sbjct 623794 CAAGTCGGCGGGGTTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCGCAG 623735 Query 27435 GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTC 27494 || ||| | | |||||| || || ||| |||| |||||| | ||| Sbjct 623734 CTTGTGGACGACCTCGGCCAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGTGCGGGCGTC 623675 Query 27495 CGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTC 27554 |||||| || ||||| || | ||| |||||||||||||| || |||||||| || | Sbjct 623674 GACGTACTCGGCGCCGAAGTGGCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCGGC 623615 Query 27555 TTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 27613 || | ||| ||| |||| | |||| | || || | || |||||| ||||||||| Sbjct 623614 CTCGCGGTGGCCGA-GCCCGACGCTGTCGAGGAACTCGCGCGAGCCGTTGCCGTCCCAGA 623556 Query 27614 TCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 27673 |||| || |||| ||| || ||| || || | || ||||||||||| || | Sbjct 623555 TCTTGACGCCCTGCTCCGACAGCGAGAGCGACGACGTCGCGCCGCTGACGAACCAGAGGA 623496 Query 27674 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 |||| | | |||||| ||||| | ||||||||| |||||||| Sbjct 623495 GCTCGGCGAGCACGGCCCGGTGGAAGACGCGCTTGGTCGTCAGGAGGGG 623447 >seq26 Length=307012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/181 (72%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568 ||||||||| | | | ||| ||| | |||| |||| ||||||||||| || || | Sbjct 123534 CGTCAAGGTCCGTGTCCGTACCACCAAGATCCCACAGATTGGTGACAAGTTCGCATCTCG 123593 Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626 |||||| || ||||| || ||| | | || ||| ||||| |||||||| ||| | Sbjct 123594 TCACGGT-CAGAAGGGCACTATTGGTGTCA--CTTACCGTCAGGAAGACATGCCGTTC-A 123649 Query 48627 CAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685 | | || || || ||||||| | |||||||||||||||||| |||| || | |||| Sbjct 123650 CTCGCGAGGGTGTCACGCCCGACATTATCATCAACCCCCACGCCATTCCATCGCGTATGA 123709 Query 48686 C 48686 | Sbjct 123710 C 123710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505060899725