Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01-
05] 475 sequences; 35,730,243 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq4 163 6e-35
seq80 154 3e-32
seq5 147 5e-30
seq88 127 4e-24
seq35 109 1e-18
>seq4
Length=784365
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || || || | ||| || || |||||||||||||| |
Sbjct 47165 ACCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 47224
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || ||||||||||||| || || |||||| ||
Sbjct 47225 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGG 47284
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| | || ||| | ||||||||||| |||| || ||
Sbjct 47285 GATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCCAC 47344
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 47345 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 47392
Score = 143 bits (158), Expect = 6e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || |||| || | || || || ||||| ||||||||||
Sbjct 46710 CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 46769
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| |||||||| || | || || || || ||||| | ||| || ||||| ||
Sbjct 46770 AGCGTCCGGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 46829
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||| ||||| || ||| | || || ||||| || | || ||
Sbjct 46830 ATTCCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTGTCAATGGTGTCTGAGGACTCCAC 46888
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || ||||| || |||||||| ||||| ||||| ||||||||
Sbjct 46889 CTCTAGTGTTATCGTTTTTCCCGTCAATGTCTTGACGAAGATCTGCAT 46936
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | || || || || ||||||||||| |
Sbjct 46937 ACCACCACGAAGGCGGAGAACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 46996
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || || ||||| || || || ||||||||||||| || || ||||| ||
Sbjct 46997 CAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 47056
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||||||||| || | |||||
Sbjct 47057 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGAC 47116
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || || | ||||| || || || |||||
Sbjct 47117 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 47164
>seq80
Length=149332
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| | || || || | ||||| || || |||||||||||||| |
Sbjct 52912 ACCACCACGGAGGCGCAACACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 52853
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || ||||| ||||||| || || ||||| ||
Sbjct 52852 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 52793
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| | || || | ||||| |||||||| | || ||
Sbjct 52792 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCCAC 52733
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 52732 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 52685
>seq5
Length=773751
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||||||||| || || || ||||| ||||||
Sbjct 717619 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 717560
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || |||||| || || ||||||||||| |||||||| | || || | |||
Sbjct 717559 AATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 717500
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| || || ||||| ||||| ||||||| ||||| |||||
Sbjct 717499 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 717441
>seq88
Length=140259
Score = 127 bits (140), Expect = 4e-24
Identities = 177/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| || | || | | ||| ||||||||| | ||| ||| |||| ||| ||
Sbjct 57134 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCCTGCAGT 57075
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
|| |||||||||| || | || ||| ||| || ||||| ||||| || || ||| |
Sbjct 57074 CTGCTCGGCATGAACGCCAACCTGATGAAGCAGTACATCGAGTTCGTGGCCGACCGTCTC 57015
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
| || || || || ||||||| || || || || | |||||||||| || ||||||
Sbjct 57014 CTTGTCGCCCTTGGCAACGAGAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATGGAG 56955
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
||| || || || || || ||||||||||| ||||||||| | || || || | |
Sbjct 56954 AACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAG 56895
Query 230403 CCCGGTGT 230410
|||||||
Sbjct 56894 GCCGGTGT 56887
>seq35
Length=278380
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 316982 CGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCA 317041
|||| ||||| ||||| || | | || || | |||| | | ||||| || || |
Sbjct 92404 CGTCCAGGTCGTGCTCGACGAACACGGTCTTGACCTCGTCCTGCTTGGGGAAACCCTCGA 92345
Query 317042 ACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAA 317101
||| |||| || || | ||| || || ||||| || ||||| ||||||||||| |
Sbjct 92344 CCTGCTCGTTGTTGATGGCACGCATGAGGGTGGACTTTCCGGCACCGTTGGGGCCGCAGA 92285
Query 317102 GACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCAC 317161
||||||| || || ||| || | ||||||| |||| ||||||||||| |||
Sbjct 92284 GACCATAGCGTCGGCCACGCTTAAGGCGGAGACGGGTGCTGTTGAGAAGAATCTTGGCAC 92225
Query 317162 CATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199
| || || |||||||||||||| || || |||| ||||
Sbjct 92224 CGTAGGCGAGAGAGAACTCACACTCGCAGAGGTTCTCG 92187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046732829610650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |