Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Valsa_20mali_20var._20pyri_20[genbank_20GCA_5F000813385.1_202015-01- 05] 475 sequences; 35,730,243 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 156 1e-32 seq80 147 5e-30 seq5 138 3e-27 seq14 86.0 2e-11 >seq4 Length=784365 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 47389 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 47330 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || ||||||||||| |||||||| Sbjct 47329 ACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCAGCAG 47270 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||||| || || || | || || |||| || ||| || Sbjct 47269 CGCCTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATC 47210 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 47209 CAGAAGGAGTCCACCCTTCACCTCGT 47184 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||||||||| || || |||||||| ||||||| Sbjct 46933 CAGATCTTCGTCAAGACATTGACGGGAAAAACGATAACACTAGAGGTGGAGTCCTCAGAC 46874 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 46873 ACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAG 46814 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||| | |||||||| |||| || | || || || || Sbjct 46813 CGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCCGGACGCTGTCTGACTACAATATC 46754 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 46753 CAGAAGGAGTCGACCCTGCA-CTTG 46730 >seq80 Length=149332 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| ||| ||| Sbjct 52688 CAGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGTCCTCGGAC 52747 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 52748 ACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 52807 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 52808 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATC 52867 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || || ||| | ||| Sbjct 52868 CAGAAGGAGAGCACCCTTCACCTCGTGTTGCGCCTC 52903 >seq5 Length=773751 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || || || || |||||||| ||||| || ||| ||||||||| Sbjct 717441 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATC 717500 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || ||||| || |||||||| ||| | Sbjct 717501 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGATTG 717560 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 717561 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 717619 >seq14 Length=442650 Score = 86.0 bits (94), Expect = 2e-11 Identities = 230/350 (66%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187 ||| ||||||||||| |||||| |||||| ||||| |||||||| | || Sbjct 88147 GTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTGCCGGT 88206 Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247 |||| || || | || ||| | ||| || | || ||||||| | ||| | | Sbjct 88207 CTCGGTCTGGGCCTCGAGGATGGCGTACCACAGCTTCTGAGCCTTCATGGTCTTGCGGCC 88266 Query 214248 TCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCATC 214307 | || || | |||||||| || || |||| ||| || || ||||||| ||| | Sbjct 88267 GCGGCCTTCTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCGTCACCGTAGCAGTCAGC 88326 Query 214308 AAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTTT 214367 ||| || || |||||||||||| | || |||| | || || | | || | || Sbjct 88327 AAGGCCAGGGCACTCGTTGGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACCCGCTT 88386 Query 214368 CATGAAAAGGTCGGAAGTCCAGATTGCATAAAAAATCTCTCTGGCTCTCATAAGGTCATC 214427 |||||| ||||| | | |||||| ||| || | || | ||||| | || | Sbjct 88387 CATGAAGAGGTCAGGAATCCAGAGAGCAAGGAAGAGGTCGCGGGCTCGGACCTCCTCCTT 88446 Query 214428 ACCTCCCGGTTTTTTCGC--GTCGACAAAGTCAAAGATATCAACGTGCCA 214475 || | |||| |||||| ||||| || || |||| |||| ||||||| Sbjct 88447 AC--CGTGGTTCTTTCGCAAGTCGAGGAACTCGAAGACATCAGCGTGCCA 88494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723874167150