Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq115 250 2e-61 seq52 120 3e-22 seq482 100 3e-16 >seq115 Length=330173 Score = 250 bits (276), Expect = 2e-61 Identities = 501/735 (68%), Gaps = 12/735 (2%) Strand=Plus/Minus Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCA 23309 |||| | ||| | || ||||| ||| | || ||| |||||| || || || ||| Sbjct 101862 ACTTCTCGTAGAGAGCCTCAAACTCGTCGCCATAAATGTCGGCGAGTCCAGGGCATTCGT 101803 Query 23310 TCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 || ||||| || ||||| || | ||| || || |||| || || || || | Sbjct 101802 GAGGGCACATCAGCGTCCACTCGCCGTTCTGTTCGACTCGCTTCATGAATAGGTCGGGAA 101743 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 |||| | || ||||| || ||||| || || |||| ||||||||| ||||||| ||| Sbjct 101742 TCCACAAGGCATAGAAAAGATCGCGAGCACGTGCCTCTTCTTTGCCGTGGTTCTTTCTCA 101683 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 |||||| ||| | || || || ||||| ||||||||||||| |||||| || || | Sbjct 101682 GATCCAACCAGTTGATGACATCTGCGTGCCATGGCTCGAGGTAAATGGCAAATGCACCAG 101623 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | ||| || || || ||||||||||| || || || || | | || | ||||| | Sbjct 101622 GACGCTTGTTTCCACCTTGATCGACGTAGCGAGCAGTCGCGTCGAAGACACGGAGCATGG 101563 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTC-GA-AC 23607 | || || ||||| || | |||| | || | | || || | |||| || || Sbjct 101562 GAACAAGCCCGTTTGATGTGCCGTTTGTTCCTCCAATGTATGATCCGGTGGCTCTGATAC 101503 Query 23608 GTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAG 23667 | ||| || | || ||| || || || | | ||||| |||||||| || || || Sbjct 101502 G--GTGCACATTGAGACCAATACCGCCAGCGGTCTTCGAAATCATCGCACAAGTCTTAAG 101445 Query 23668 AGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACAT 23727 |||||||| || ||||| |||||||||||||| || ||| | ||| || || || | Sbjct 101444 GGTGTCGTAAATACCCTCAATGCTGTCCTCTTTTGTATCGATGAGGAAGCAAGACGAGAG 101385 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 || | || || || | || || || || || |||||| ||||||||| || Sbjct 101384 CTGTGGTTGAGGTGTGCCTGCATTAAAAAGCGTGGGCGAGGCGTGTGTAAAGTATTTGTT 101325 Query 23788 CGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGG 23846 |||||| ||| ||||| || | ||| || || ||||| ||||| ||||| || || | | Sbjct 101324 CGACATGTAG-TTGTATGTCTGGATAGCAGCCTCAATATCCTCCCCGTGAATCCCAACAG 101266 Query 23847 CGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACA 23903 | |||||||| ||||| | ||| || | || ||||| | |||| | || || || Sbjct 101265 CTACGCGCATGATCATATGTTGTGGACGCTCAGCGACCTT---GCCGCTTATCCGGAGCA 101209 Query 23904 GATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCA 23963 | || || || | | |||||| || ||||| || | || || ||||| | |||| | Sbjct 101208 GGTACGATCGCTCGAGCGTTTTGAAACCAAAGTATTGGTAATTGAAGTCTCTGTCGTAGA 101149 Query 23964 CTATGGCCGAATTCA 23978 | || || || |||| Sbjct 101148 CAATAGCGGAGTTCA 101134 Score = 134 bits (148), Expect = 1e-26 Identities = 452/688 (66%), Gaps = 22/688 (3%) Strand=Plus/Minus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| |||| | || ||| | | || || ||||| |||||| Sbjct 103062 TCTTGATCGACAGTGAACTGGATGGGGGCTGAGGCGGCCATTGTTCGGAGATAGTACATG 103003 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||||| |||||||||||| | || || || ||||| | || || | Sbjct 103002 CCGGTCTTCAAACCCATCTTCCAACCAGCGAAGTGCATGGACGTGATCTTGCCCATGGTG 102943 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | ||||| | || || |||| ||||| |||||||| || || |||||| Sbjct 102942 GGCTCTTTCATGTGGATGTTCAAGCTCTGAGATTGATCAATAAACGCACCGCGGTCGGCG 102883 Query 22283 GCCATATTTATCAATGTACGCATCGAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 ||||| |||| | |||||| ||| || ||||| |||||||||||||| ||| Sbjct 102882 GCCATGGTTATGATGGTACGCT--GACTGATCTCCCAGACGGTCTTGTACAGGGCTTTGA 102825 Query 22341 TCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399 | || || || | | | || | |||| ||| || | ||||| ||| Sbjct 102824 TGTCATCAGGGAT-GTTGGGTATATTTTGGATGGAGCCACCTTCAGCAATGATGCGATTC 102766 Query 22400 TTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCA 22457 || || | || ||| | ||| || || | ||| |||| || ||| |||| | Sbjct 102765 TTCATGTTGTCAGACCAGAGACCCATCTCGACGAGATCCTTGAGTAGCCATG--GGTTAA 102708 Query 22458 CCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 | || || ||||| || | |||| || || || ||| ||||| || ||| | || ||| Sbjct 102707 CGACCTGGAACTCTCCAG-CAAGCACTCGACGAGAGTAGATGTTCGACGTGTATGGCTCG 102649 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 || | |||||| || || ||||||| || ||||| |||||||| || || | || Sbjct 102648 AAGCACTCATTGAAACCGAGAATCTGAGATGTGGAAGCAGTCGGCATAGGAGCAACAAGA 102589 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 ||||| || | | |||||| | || | | ||||||| ||||||||| ||| Sbjct 102588 AGCGAATTGCGGACACCGTGCCTCTTGATATCAGCCTTGAGCGAGTCCCAGTCCCAGAGA 102529 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGC 22694 || | || || || || |||||| ||||| || | | ||| | || || || Sbjct 102528 TCAGTGGGTGTGAC---GTTCCACATGTCGTACTGGAGAATGCCTTGGGAAACG--GGTG 102474 Query 22695 TGCCTTCGTACGTTTCGTACGGACCAT-ATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753 ||||||||| | | ||| | ||| | | | || || || | |||| || || Sbjct 102473 AGCCTTCGTAGGACTTGTATGTACCCTCCTCTTGC-GCGAGCTTGCAGGACGAGGTCAGA 102415 Query 22754 GCGCCGTAATATATAGTCTCGAAGATTT 22781 ||| ||| ||| || ||||||||||||| Sbjct 102414 GCGGCGTGATAGATTGTCTCGAAGATTT 102387 >seq52 Length=836814 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || ||||| || || || |||| || ||| | ||| Sbjct 426727 ATGCAGATTTTCGTGAAGACTCTCACCGGCAAGACCATTACACTCGAAGTCGAATCATCC 426786 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| ||| ||| | |||||||||||| | || || ||||| Sbjct 426787 GATACGATCGACAACGTCAAGACAAAGATTCA-GGACAAGGAAGGAATCCCACCAGACCA 426845 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || || |||||||| || ||||||| || || Sbjct 426846 GCAGCGCCTCATCTTCGCAGGAAAGCAACTGGAAGACGGACGTACGTTGAGCGACTACAA 426905 Query 31372 CATTCAAAAAGAATCGAC 31389 ||||||||| || ||||| Sbjct 426906 CATTCAAAAGGAGTCGAC 426923 >seq482 Length=325002 Score = 100 bits (110), Expect = 3e-16 Identities = 221/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGG 58037 |||| || ||||||||||| || || ||| || | | ||||| || | || || ||| Sbjct 233436 TCGCCTTTGCCGCCGTCGAGGGCATCTTC-TTCAGCGGTGCTTTCGCATCCATCTTCTGG 233378 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| ||||| || ||||||||| |||| || ||||||| | || || ||||| Sbjct 233377 CTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCTCCCGCGAT 233318 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 ||||| | || || ||||| || ||||| | | ||| || | ||| || || || Sbjct 233317 GAGGGCATGCACACCGATTTCGCCTGCCTCCTTTTCTCACAGCTCAACAAGAAGCCTTCG 233258 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | || | || | || || || ||||| || ||||| | ||||| | | | Sbjct 233257 CCTGAAGCCGTCCGCGCTATCATTACTGAGGCAGTACAAATCGAGCAGGAGTTCTTGAGC 233198 Query 58218 GAAGCCCTACC-GGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 || || ||||| | | | ||||||| |||||| | | |||| | |||||||| Sbjct 233197 GAGGCTCTACCATGCAGAC-TGCTCGGCATGAACTCGGGACTTATGTGCCAATACATTGA 233139 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCG 58302 ||||||||| || | || |||||| Sbjct 233138 GTTTGTTGCTGATCGTCTACTGCTCG 233113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762739143440