Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq482 116 5e-21 seq501 105 1e-17 >seq482 Length=325002 Score = 116 bits (128), Expect = 5e-21 Identities = 288/433 (67%), Gaps = 17/433 (4%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || || |||||||| |||||||||||||| ||| ||| || ||||||| Sbjct 233440 CTCGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCATCCATCTTC 233381 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||||||||| ||||||||||| |||| | |||||| | || || || Sbjct 233380 TGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCTCCCGC 233321 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || |||||| | ||| || || ||| || || |||| || | || | || Sbjct 233320 GATGAGGGCATGCACACCGATTTCGCCTGCCTCCT-TTTCTCA-----CAGCTCAACAAG 233267 Query 125607 TGCAGATCCAGCG-ATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 | || || |||| ||| | || | || || || || || || || Sbjct 233266 ----AAGCCTTCGCCTGAAGCCGTCCGCGCTATCATTACTGAGGCAGTACAAATCGAGCA 233211 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||||| | | ||| | ||||| ||| || | |||||||||| || ||||| Sbjct 233210 GGAGTTCTTGAGCGAGGCTCTACCATGCAGACTGCTCGGCATGAACTCGGGACTTATGTG 233151 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGAT 125782 | | ||||| |||||||| || |||||||||||| || | ||||| |||| | Sbjct 233150 CCAATACATTGAGTTTGTTGCTGATCGTCTACTGCTCG---CGCTTGGCAATGTCAAGGT 233094 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 |||||| || || || ||||| |||||| | || || || | || ||||| || Sbjct 233093 TTACAATGCTGTCAACCCTTTTGACTTCATGGAGAATATTTCCCTCGCCGGAAAGACGAA 233034 Query 125843 CTTTTTCGAGAAG 125855 || ||||||||| Sbjct 233033 TTTCTTCGAGAAG 233021 >seq501 Length=520086 Score = 105 bits (116), Expect = 1e-17 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 ||||||| ||||| || || || || |||||||| ||| | |||| || || |||||| Sbjct 370072 AAGAGGGTGATCTTGGACCTGTCTATGGATTCCAATGGCGACACTTTGGAGCCGAGTATG 370131 Query 70122 TAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGA 70179 | || ||||| |||||| ||| | ||||| || || || |||||| |||||| |||| || Sbjct 370132 TGGA-TGCGAAGACAGATTATGCCGGTCAAGGCGTGGACCAATTGGCAGACA-TCATCGA 370189 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||| ||| || || | | || | || | |||||||||||||||| Sbjct 370190 CAAACTTAAGAACAAGCCTTACGACCGCCGAATTATCTTGAGTGCATGGAATCCTGCAGA 370249 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCA-CTGTTTGGCTCAGTTTTAC 70288 || | | ||||| || || || || || ||||| || || |||||| Sbjct 370250 CCTGAAAAAGATGGCCCTCCCGCCTTGCCATATGTTT-GCCCAATTTTAC 370298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053114051320