Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq52 118 9e-22 seq519 82.4 6e-11 >seq52 Length=836814 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| | || || ||| || | Sbjct 426499 ATGCAGATCTTCGTCAAGACGTTGACGGGTAAGACCATCACATTGGAGGTTGAATCCTCA 426558 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| ||||| || ||||| |||||||||||||| || ||| Sbjct 426559 GACACCATCGACAACGTCAAGACCAAAATCCAGGACAAAGAGGGTATTCCACCGGACCAA 426618 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || || || || || | ||||| ||||||| | ||||| |||||| Sbjct 426619 CAGCGACTTATCTTCGCTGGAAAGCAACTCGAGGACGGCCGCACCCTGTCCGACTACAAC 426678 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || || || || || | ||||| ||| Sbjct 426679 ATCCAGAAGGAATCAACTCTGCACTTGGTCTTACGTCTTCGCGGTGGT 426726 Score = 104 bits (114), Expect = 2e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 22241 TAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAAC 22300 |||| || || || |||| || || || || ||| ||| ||| | ||| | |||| Sbjct 426293 TAACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGA 426352 Query 22301 AAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCA 22360 || || |||||||||||||| || ||||| || ||||| ||| | || ||||| |||| Sbjct 426353 CCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAACAGCGTTTGATCTTTGCGGGCA 426412 Query 22361 AACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| | |||||| ||| ||| | ||||| ||||| || || || || || || Sbjct 426413 AACAGCTGGAGGATGGCCGTACCTTGTCCGACTACAATATCCAGAAGGAGTCTAC 426467 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | ||||| || || | || || ||||| ||| | || Sbjct 426727 ATGCAGATTTTCGTGAAGACTCTCACCGGCAAGACCATTACACTCGAAGTCGAATCATCC 426786 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| ||| ||||| |||||||| || || ||||| || || Sbjct 426787 GATACGATCGACAACGTCAAGACAAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAG 426846 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || || | || || || || | ||| |||||| Sbjct 426847 CAGCGCCTCATCTTCGCAGGAAAGCAACTGGAAGACGGACGTACGTTGAGCGACTACAAC 426906 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 426907 ATTCAAAAGGAGTCGAC 426923 >seq519 Length=112231 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || ||||| | ||||| || || |||||||||| || ||| | | || || | Sbjct 63376 TTTCGTCAAAACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAATCGTCTGACACAAT 63317 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || || || || || || ||||| || ||||| || || Sbjct 63316 CGACAATGTCAAGACTAAGATCCAGGATAAAGAAGGAATCCCACCAGACCAACAGCGGCT 63257 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || ||||| || ||| | |||||| || ||| | || |||||||||||||| Sbjct 63256 GATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACCTTGAGTGACTACAACATTCAAAA 63197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724639159205