Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq52 116 4e-21 seq482 96.9 3e-15 seq519 89.7 5e-13 >seq52 Length=836814 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | |||||||||||||||||||||||||| Sbjct 426954 GCCGCCACGGAGACGTAGCACCAAGTGCAATGTCGACTCCTTTTGAATGTTGTAGTCGCT 426895 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||| || ||||| || || | |||| || ||||| ||||| || || Sbjct 426894 CAACGTACGTCCGTCTTCCAGTTGCTTTCCTGCGAAGATGAGGCGCTGCTGGTCTGGTGG 426835 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| ||| | ||||| || | ||| || | || |||| || || Sbjct 426834 GATTCCTTCCTTGTC-CTGAATCTTTGTCTTGACGTTG-TCGATCGTATCGGATGATTCG 426777 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| || | || || || || ||||| || || ||||||||||| Sbjct 426776 ACTTCGAGTGTAATGGTCTTGCCGGTGAGAGTCTTCACGAAAATCTGCAT 426727 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || || || | |||| ||||| || |||||||||||| | Sbjct 426725 CCACCGCGAAGACGTAAGACCAAGTGCAGAGTTGATTCCTTCTGGATGTTGTAGTCGGAC 426666 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||||||| || || | |||| || |||||||||||||| || Sbjct 426665 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATAAGTCGCTGTTGGTCCGGTGGA 426606 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| || |||| || || | ||| || | |||||| | || || | Sbjct 426605 ATACCCTCTTTGTC-CTGGATTTTGGTCTTGACGTTG-TCGATGGTGTCTGAGGATTCAA 426548 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| |||| || || || || |||||||| Sbjct 426547 CCTCCAATGTGATGGTCTTACCCGTCAACGTCTTGACGAAGATCTGCAT 426499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||| || ||||| ||||| || ||||| || | | Sbjct 426464 GACTCCTTCTGGATATTGTAGTCGGACAAGGTACGGCCATCCTCCAGCTGTTTGCCCGCA 426405 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | |||||||||||| || || || || || ||||| || | || || || | Sbjct 426404 AAGATCAAACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTC-TTGGATCTTGGTCTTGAC 426346 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 ||| || | ||||||| | ||||| ||||||| || | || || ||||| Sbjct 426345 GTTG-TCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 426295 >seq482 Length=325002 Score = 96.9 bits (106), Expect = 3e-15 Identities = 344/523 (66%), Gaps = 25/523 (5%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGC 52384 || || ||| | || || ||||| | |||||| |||||||||| | || |||| | | Sbjct 233515 GTCCCTTGCATCCGGAAGAAGGCCGACTGGGCATTGAAGTGGATTTGCGAT-GACAACTC 233457 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || | || ||| | || ||||| ||| ||||||||| | || || ||| | Sbjct 233456 TACCTTCGCGTCGCGTCTCGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT-G 233398 Query 52445 CTTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503 |||| || ||||||| | | || | | || | ||||||||| |||| ||| || Sbjct 233397 CTTTCGCATCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCA 233338 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT-AC 52559 ||||| | || || ||||| || || ||||||| || || || |||||| | || || Sbjct 233337 ACGAGCTCATCTCCCGCGATGAGGGCATGCACACCGATTTCGCCTGCCTCCTTTTCTCAC 233278 Query 52560 AAGACGCGCGTGACCGAAAAATTGGATTCG---GACACGATCCTGAGC-ATGTTCAAGGA 52615 | || || || || | |||| || | ||| | || || | | || Sbjct 233277 A------GCTCAAC--AAGAA--GCCTTCGCCTGAAGCCGTCC-GCGCTATCATTACTGA 233229 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 ||| || ||||| ||||||| || | | || || || | ||||| ||||| Sbjct 233228 GGCAGTACAAATCGAGCAGGAGTTCTTGAGCGAGGCTCTACCATGCAGACTGCTCGGCAT 233169 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 |||| || |||||| | ||||| |||||||| || |||||||| || | ||| Sbjct 233168 GAACTCGGGACTTATGTGCCAATACATTGAGTTTGTTGCTGATCGTCTACTGCTCGCGCT 233109 Query 52736 CGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 || | | ||| || | ||| ||| ||| || ||||| || ||| | || ||||| | Sbjct 233108 TGGCAATGTCAAGGTT-TACAATGCTGTCAACCCTTTTGACTTCATGGAGAATATTTCCC 233050 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | | || ||||| || || ||||||||||| || || || || Sbjct 233049 TCGCCGGAAAGACGAATTTCTTCGAGAAGCGTGTGGGTGACTA 233007 >seq519 Length=112231 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||||||||||||||| |||| ||||| ||||| || || || |||| ||| Sbjct 63195 CCTTTTGAATGTTGTAGTCACTCAAGGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAGA 63254 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGT 138543 | || ||||||||||| || || || |||||||| || ||| || | || |||| Sbjct 63255 TCAGCCGCTGTTGGTCTGGTGGGATTCCTTCTTTATCCTGGATCTTAGTCTTGACATTG- 63313 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||| | ||| || ||||| | || | || || || || || ||||| || Sbjct 63314 TCGATTGTGTCAGACGATTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGGGTTTTGACG 63373 Query 138604 AAA 138606 ||| Sbjct 63374 AAA 63376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258324445040