Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq52 123 2e-23 seq115 107 2e-18 seq482 104 2e-17 >seq52 Length=836814 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| || || || ||||| |||| || ||| ||| ||| || || ||||| | Sbjct 426923 GTCGACTCCTTTTGAATGTTGTAGTCGCTCAACGT--ACGTCCGTCTTCCAGTTGCTTTC 426866 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| || ||||| ||||||||||| |||||| || Sbjct 426865 CTGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGAATCTTTGTCT 426806 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||| |||| | || || |||| || | ||| |||||||| |||| Sbjct 426805 TGACGTTGTCGATCGTATCGGATGATTCGACTTCGAGTGTAATGGTCTTGCCGGTGAGAG 426746 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 426745 TCTTCACGAAAATCTGCAT 426727 >seq115 Length=330173 Score = 107 bits (118), Expect = 2e-18 Identities = 350/538 (65%), Gaps = 8/538 (1%) Strand=Plus/Minus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTTATCTTCATC 148118 || ||||| ||||| || ||||| |||||||| |||| || |||| | ||| Sbjct 102909 TGATCAATAAACGCACCGCGGTCGGCGGCCATGGTTATGATGGTACGCTGACTG---ATC 102853 Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 |||||| | ||||||||||| ||||| | ||| || ||| | || || | Sbjct 102852 TCCCAGACGGTCTTGTACAGGGCTTTGATGTCATCAGGGATGTTGGGTATATTTTGGATG 102793 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 ||||| | | |||| || |||| ||| | ||| | | || | ||||| Sbjct 102792 GAGCCACCTTCAGCAATGATGCGATTCTTCATGTTGTCAGACCAGAGACCCATCTCGACG 102733 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 || || | || || | | || || ||||| ||||| || || ||||| || || ||| Sbjct 102732 AGATCCTTGAGTAGCCATGGGTTAACGACCTGGAACTCTCCAGCAAGCACTCGACG-AGA 102674 Query 148299 -TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || | ||| ||| | || || || |||| ||| || | |||||| | || | Sbjct 102673 GTAGATGTTCGACGTGTATGGCTCGAAGCACTCATTGAAACCGAGAATCTGAGATGTGGA 102614 Query 148358 TGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG 148417 || || ||||| || || || ||||| ||||| | |||| | | || || | Sbjct 102613 AGCAGTCGGCATAGGAGCAACAAGAAGCGAATTGCGGACACCGTGCCTCTTGATATCAGC 102554 Query 148418 CTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 ||| || | ||||||||||||| | ||||| |||||||||||||||||||| || Sbjct 102553 CTTGAGCGAGTCCCAGTCCCAGAGATCAGTGGGTGTGACGTTCCACATGTCGTACTGGAG 102494 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAG 148537 |||||| || | |||| ||| ||||| || |||| | || | | | ||| || Sbjct 102493 AATGCCTTGGGAAACGGGTGAGCCTTCGTAGGACTTGTATGTACCCTCCTCTTGCGCGAG 102434 Query 148538 TTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC 148595 | |||| || || ||| ||| || || |||||| ||||| |||||||| Sbjct 102433 CTTGCAGGACGAGGTCAGAGCGGCGTGATAGATTGTCTCGAAGATTTGAATGTTGAGC 102376 >seq482 Length=325002 Score = 104 bits (114), Expect = 2e-17 Identities = 162/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || || || ||||||| |||||| ||||| || || ||||||||| || ||| Sbjct 233289 AGGCAGGCGAAATCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTC 233348 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGC-AAAGCTGCCCGAAAA 120758 | ||||||||||| || | |||||| |||| |||| || ||||| || || Sbjct 233349 AAGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGATGCGAAAGC-ACCGCTGAA 233407 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | |||||| ||| |||||||||||| | ||| || || || | ||| Sbjct 233408 GAAGATGCCCTCGACGGCGGCAAAGGCGACGAGACGCGACGCGAAGGT---AGAGTTGTC 233464 Query 120819 GTCG---ATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||| |||||||||| ||||| |||||||| || || | ||| || Sbjct 233465 ATCGCAAATCCACTTCAATGCCCAGTCGGCCTTCTTCCGGATGCAAGG 233512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416829906680