Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq115 132 6e-26 seq482 102 1e-16 seq52 102 1e-16 >seq115 Length=330173 Score = 132 bits (146), Expect = 6e-26 Identities = 492/754 (65%), Gaps = 34/754 (5%) Strand=Plus/Plus Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT---CTTTGTCGC 105271 || |||||| | ||| ||||||| |||||||| || |||| ||| || || ||| Sbjct 102290 CATCGTCCAGTCGGTGTCGGTGTGCAGGGTCTTGCTGATGCTTTCCTTGCGCTCCGTCTA 102349 Query 105272 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTAT 105331 | | || || || ||||| || | |||| | || || ||||| || ||| Sbjct 102350 CCC---TTCGAGTCTCCTGAAGCAAAAAAGCTCAACATTCAAATCTTCGAGACAATCTAT 102406 Query 105332 CACGCCGCTCTTGAGGCGAGTTCAG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCT 105389 ||||||||||| || | || | | || | || | | || ||| |||| | ||| Sbjct 102407 CACGCCGCTCT-GAC-CTCGTCCTGCAAGCTCGCGCAAGAGGAGGGTACATACAAGTCCT 102464 Query 105390 TTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA 105449 || || || || | ||| ||||| | || || | || |||||| || || | ||| Sbjct 102465 ACGAAGGCTCACCCGTTTCCCAAGGCATTCTCCAGTACGACATGTGG-AACGTCACACCC 102523 Query 105450 AGCT--TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 105507 | || || || |||||||| | ||||||| |||||| | | ||| | || || Sbjct 102524 A-CTGATCTCTGGGACTGGGACTCGCTCAAGGCTGATATCAAGAGGCACGGTGTCCGCAA 102582 Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 105567 || || | ||||| ||||| || || ||||| | || || | ||| ||||| Sbjct 102583 TTCGCTTCTTGTTGCTCCTATGCCGACTGCTTCCACATCTCAGATTCTCGGTTTCAATGA 102642 Query 105568 ATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTG 105626 ||||| || || |||||| |||||||||| ||| | || || || |||||||| Sbjct 102643 GTGCTTCGAGCCATACACGTCGAACATCTACTCTC-GTCGAGTGCTTGCTGGAGAGTTCC 102701 Query 105627 TGATTGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 105684 | | || ||| ||| || | | || ||| ||||| ||||||||||| | | Sbjct 102702 AGGTCGTTAACC--CATGGCTACTCAAGGATCTCGTCGAGATGGGTCTCTGGTCTGACAA 102759 Query 105685 TATGAAGGATCTCA----TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTC 105740 |||||| ||| || || |||| ||||| ||||| |||||||| | || | Sbjct 102760 CATGAAGAATCGCATCATTGCTGAA----GGTGGCTCCATCCAAAATATACCCAACATCC 102815 Query 105741 CAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCA---AGATGAAGGATGTCA 105797 | |||| || || ||||| || || ||||| |||| || | | | ||| Sbjct 102816 CTGATGACATCAAAGCCCTGTACAAGACCGTCTGGGAGATCAGTCAG-CGTACCA--TCA 102872 Query 105798 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCA 105857 | ||||||||| || || ||| || ||||||||| ||| || |||| || || Sbjct 102873 TAACCATGGCCGCCGACCGCGGTGCGTTTATTGATCAATCTCAGAGCTTGAACATCCACA 102932 Query 105858 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 105917 || || || || ||| |||| || | || |||||| | ||||||||| |||| Sbjct 102933 TGAAAGAGCCCACCATGGGCAAGATCACGTCCATGCACTTCGCTGGTTGGAAGATGGGTT 102992 Query 105918 TCAAAACGGGGATGTATTACCTCCGATCTAAGGC 105951 | || || || ||||| || |||||| | | ||| Sbjct 102993 TGAAGACCGGCATGTACTATCTCCGAACAATGGC 103026 >seq482 Length=325002 Score = 102 bits (112), Expect = 1e-16 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGT 94789 |||| || || || | ||||| || || ||||| |||||||| || ||| || | Sbjct 233517 CAGTCCCTTGCATCCGGAAGAAGGCCGACTGGGCATTGAAGTGGATTTGCGATGACAACT 233458 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | | |||| || ||| ||| |||| ||||| || ||||| ||||||||| | Sbjct 233457 C---TACCTTCGCGTCGCGTCTCGTCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCG 233401 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 || | ||| | || | |||||||||||||| ||||||||||| || | ||||| Sbjct 233400 GTGCTTTCGCATCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCT 233341 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||||| ||||| || || ||||| Sbjct 233340 CCAACGAGCTCATCTCCCGCGATGAGGG 233313 >seq52 Length=836814 Score = 102 bits (112), Expect = 1e-16 Identities = 359/551 (65%), Gaps = 35/551 (6%) Strand=Plus/Plus Query 9488 CGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAGG 9547 ||||| || ||| ||| | || || | || || || ||||| || || || ||| Sbjct 698777 CGTCCACGGACATCTGGCAAAGGAACATTGACGTTGCGGTCAAAACGGCCGGGTCGAGTA 698836 Query 9548 AGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCA 9607 ||||||| ||| || || ||| || || || |||| || || || || | Sbjct 698837 AGCGCGTGATCGAGCGACTCGGGAAAATTGGTGGCTGCAATGATAATGATGCCACTTCCT 698896 Query 9608 TTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTC 9667 | |||||| ||||| | || |||||||||||||| | |||||||| Sbjct 698897 TGATCAAATCCATCGAGTTCGGTCAAAAGTTGGTTCAGAGTTTGTT-------------- 698942 Query 9668 GCTGGCATAC-CACCAGCACT---GCGTTGCTTTCCCACG---GCATCAATCTCATCAAT 9720 ||||||| ||||| | | | || | ||||| | ||||| | ||| || || Sbjct 698943 --TGGCATAAGCACCATCGCGTGGGTGTCGTTTTCCTCCAATCGCATCCAACTCGTCGAT 699000 Query 9721 GAAGACGAT-GCATGGTTGATTTT-CGCGAGCGACTT-CAAAGAGATCCCGTACACGCTT 9777 ||||| ||| ||| || || || ||||||| |||| | ||||| || || |||||||| Sbjct 699001 GAAGATGATAGCAGGG--GACTTAGCGCGAGC-ACTTGCGAAGAGCTCTCGCACACGCTT 699057 Query 9778 GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGAC 9837 ||||| ||||| ||| ||||||| |||| | | | || | || ||| || || Sbjct 699058 CGCGCCGACACCGACATACATCTCATCAAATTCGGATCCAGAGGCATAGAAGAACGGAAC 699117 Query 9838 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGC 9897 | ||| || || | || | ||||| ||||||||||| |||||||| ||| | Sbjct 699118 GCCGGCTTCGCCAGCGACTGCCCTAGCGAGTAGAGTCTTACCGGTACCTGGTGGACCAAC 699177 Query 9898 GAGGAGGGCACCTCGTGGAATCTTGGCG-CCACT-TCCA-AAGTATCTCTCAGGTTGCTT 9954 || || | ||| ||||| ||| || ||| | || | || | | | || | ||| Sbjct 699178 AAGCAGAACCCCTTTTGGAAGCTTACCGCCCAGTGTCGAGAACTGT---TTGGGGTCCTT 699234 Query 9955 AAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGT 10014 || || |||| | |||| ||| || |||||||| | || || |||||||| | Sbjct 699235 CAGGAATGCCACCAGCTCTTGCAACTCTTCTTTGGCTTCATCGCAACCTTCAACATCACT 699294 Query 10015 AAACCGGGTTT 10025 ||| ||||| Sbjct 699295 GAACTTGGTTT 699305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256009970680