Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq52 154 4e-32 seq519 140 8e-28 seq430 84.2 5e-11 >seq52 Length=836814 Score = 154 bits (170), Expect = 4e-32 Identities = 160/206 (78%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| | ||||| ||| ||||||| Sbjct 426502 CAGATCTTCGTCAAGACGTTGACGGGTAAGACCATCACATTGGAGGTTGAATCCTCAGAC 426561 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| |||||||| || ||| || ||||||||||| || || || |||||||| || Sbjct 426562 ACCATCGACAACGTCAAGACCAAA-ATCCAGGACAAAGAGGGTATTCCACCGGACCAACA 426620 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||||||||||||| ||||| || ||||| || || | || || |||| || ||| | Sbjct 426621 GCGACTTATCTTCGCTGGAAAGCAACTCGAGGACGGCCGCACCCTGTCCGACTACAACAT 426680 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || |||||||| ||||| |||| Sbjct 426681 CCAGAAGGAATCAACTCTGCA-CTTG 426705 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| |||||||| || || || || || ||||| || ||| || || Sbjct 426730 CAGATTTTCGTGAAGACTCTCACCGGCAAGACCATTACACTCGAAGTCGAATCATCCGAT 426789 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||||||||||||| ||||||||||| || |||||||| Sbjct 426790 ACGATCGACAACGTCAAGACAAAGATTCAGGACAAGGAAGGAATCCCACCAGACCAGCAG 426849 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| || || ||||| ||| | || | ||| || ||| | Sbjct 426850 CGCCTCATCTTCGCAGGAAAGCAACTGGAAGACGGACGTACGTTGAGCGACTACAACATT 426909 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || ||| |||| |||| Sbjct 426910 CAAAAGGAGTCGACATTGCA-CTTG 426933 Score = 113 bits (124), Expect = 1e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || | ||||||||||| |||||||| Sbjct 426295 ACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAACGTCAAGACC 426354 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| || || ||||| || ||||| || || | ||||| || || ||| Sbjct 426355 AAGATCCAAGACAAGGAGGGCATCCCACCAGACCAACAGCGTTTGATCTTTGCGGGCAAA 426414 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||||| || ||||| | || |||| |||| || || |||| || || || ||||| || Sbjct 426415 CAGCTGGAGGATGGCCGTAC-CTTGTCCGACTACAATATCCAGAAGGAGTCTACACTCCA 426473 Query 178124 TCTTGT 178129 ||||| Sbjct 426474 CCTTGT 426479 >seq519 Length=112231 Score = 140 bits (154), Expect = 8e-28 Identities = 141/181 (78%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| ||||| ||||| ||||| || ||||| || ||||| ||| || ||||| || Sbjct 63376 TTTCGTCAAAACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAATCGTCTGACACAAT 63317 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| ||||| |||||||||||||| || ||||| || || || Sbjct 63316 CGACAATGTCAAGACTAAGATCCAGGATAAAGAAGGAATCCCACCAGACCAACAGCGGCT 63257 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAA 178107 |||||||||||||| ||||| || |||||| | || |||| || || ||| | |||| Sbjct 63256 GATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTAC-CTTGAGTGACTACAACATTCAAA 63198 Query 178108 A 178108 | Sbjct 63197 A 63197 >seq430 Length=527729 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || ||||||||||||||||| ||| ||| Sbjct 369219 CAGATTTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCCTCCGAC 369278 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGG 178014 |||||||| || ||||| ||||| |||| Sbjct 369279 ACCATCGACAATGTCAAGACCAAGATCCAGG 369309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203721067216458