Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq171 140 3e-28 seq18 118 1e-21 >seq171 Length=70297 Score = 140 bits (154), Expect = 3e-28 Identities = 200/281 (71%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||| |||||||| |||||| ||| || |||||||| | ||| ||| | || || Sbjct 55331 ATCTGGCGTATGTACAAGAAGGCCATGGCCTCATTCTGGACTGCCGAAGAGATTGATCTC 55272 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || |||||| | ||| | |||||| |||| ||| |||||| Sbjct 55271 TCCAAAGATGTTCCAGACTGGAACAACCGCCTCAACGACGACGAACGCTTCTTCATCTCC 55212 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || || || ||||| || |||||||| ||||| ||||| || ||||||| Sbjct 55211 CACATCCTCGCATTCTTCGCAGCATCGGACGGCATTGTCAATGAGAACCTTCTCGAGCGA 55152 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || ||||| | || || || ||||||||||| || |||||||||||| Sbjct 55151 TTCAGCAATGAAGTCCAGGTTCCAGAAGCTCGATGCTTCTACGGTTTCCAGATCGCCATG 55092 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACAC 116913 ||||| | ||||| || | || || |||||||| || Sbjct 55091 GAGAATATTCACTCCGAGACATACTCCCTTCTCATCGAGAC 55051 Score = 127 bits (140), Expect = 2e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 117037 GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCAT 117096 |||||| || || ||||| || ||||| ||| |||| || || |||||| |||| Sbjct 54877 GCGCCTAGTCGCATTCGCCGCTGTCGAAGGCATCTTTTTCAGTGGTGCTTTCGCATCCAT 54818 Query 117097 ATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 || |||||||||||||| || |||||||||||| |||| || ||||||||||||||| Sbjct 54817 TTTCTGGCTCAAGAAACGTGGTCTCATGCCCGGCTTGACCTTTTCCAACGAGCTCATCTC 54758 Query 117157 CAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 | |||||||| |||| ||||||||||||| | || ||| Sbjct 54757 TCGCGACGAGGGAATGCACACCGACTTTGCCTGTCTCCTTTTC 54715 >seq18 Length=328773 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| |||| || || ||| ||||| | | | | | ||| Sbjct 243958 ACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTGAAGACC 244017 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| || || ||||| |||||||||| || | |||| ||| |||||| Sbjct 244018 AAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCCGGCAAA 244077 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| || |||||| |||||||||||||||||||| |||| || || Sbjct 244078 CAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAATCCACACTCCAC 244137 Query 40894 CTAGT 40898 || || Sbjct 244138 CTTGT 244142 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||| ||| | || || || || | Sbjct 244162 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATTACCTTGGAGGTGGAGTCCTCG 244221 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||||||||| | ||||| Sbjct 244222 GACACCATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 244280 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | || ||||| ||||| || |||| ||||| | ||||||||| Sbjct 244281 ACAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACATTGTCCGACTACAA 244340 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||||||||| Sbjct 244341 CATCCAGAAGGAGTCCACGCTGCA 244364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215690069200