Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq18 111 1e-19 seq16 89.7 4e-13 >seq18 Length=328773 Score = 111 bits (122), Expect = 1e-19 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || ||||||||||||||||||| || || ||| || Sbjct 244599 CACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCTCAACGTACGTCCATCTTC 244540 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 | || ||||| ||| ||||||| ||||| || || || || || |||||||||| ||| Sbjct 244539 CAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCCTG 244480 Query 118648 TAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | |||| || || || | |||| || || | || || |||| || | || Sbjct 244479 GA--TTTTCGTCTTGACGTTGTCGATCGTATCGGAAGATTCAACTTCGAGCGTAATGGTC 244422 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || ||||| ||||| Sbjct 244421 TTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || ||||| |||||| Sbjct 244370 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCGTCCTCG 244311 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 ||||| || || || | || || ||||| || || || || ||||||||||||| ||| Sbjct 244310 AGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGG 244251 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | |||| |||||||| | ||| ||||| | ||| | || | Sbjct 244250 A--TCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTAATGGTCT 244193 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||| || || || || |||||||| Sbjct 244192 TACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| || || || || |||||||| || | || || ||||||||||| Sbjct 244137 GTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCCTCGAGCTG 244078 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| || ||| |||| | ||||||||| || || || || || ||||||||| ||| || Sbjct 244077 TTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTT 244018 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| || ||| ||||||| ||| | || ||||| || Sbjct 244017 GGTCTTCACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 243958 Query 118715 CA 118716 || Sbjct 243957 CA 243956 >seq16 Length=359911 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| ||||| |||||||| ||| | |||||| ||||||||||| Sbjct 61105 GTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGATAGAGTGCGGCCGTCCTCGAGCTG 61164 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||| |||| | || ||||| || ||||| || || ||||||||||| Sbjct 61165 CTTTCCTGCGAAGATCAAGCGTTGCTGGTCTGGAGGAATCCCTTCCTTGTCTGT 61218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827518417140