Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq268 248 8e-61 seq18 125 6e-24 seq171 111 1e-19 >seq268 Length=30626 Score = 248 bits (274), Expect = 8e-61 Identities = 631/949 (66%), Gaps = 16/949 (2%) Strand=Plus/Minus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308 ||||||| ||| | || || ||||| | || || ||||| ||||| || | | Sbjct 27809 TACTTTTCGTATAGGGCCTCGTATTCGTCGCCATATACTTCGGCAAGGCCAGGGCACTCG 27750 Query 23309 ATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGT 23368 || ||||| || |||| | || | |||||| || |||| || || || || Sbjct 27749 TGAGGGCACATCAGCGTCCATTCGGCGTTCTGTTCAACACGCTTCATGAACAGGTCTGGA 27690 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 ||||| | |||||||| || || || || ||| |||| ||||| ||| ||||||| || Sbjct 27689 ATCCACAAGGCGTAGAAAAGATCACGAGCACGCGCCTCTTCTTTACCGTGGTTCTTTCTC 27630 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 | ||||| ||| || | ||| |||||||| ||||| || || | || ||||| || Sbjct 27629 AGGTCCAACCAGTTGAAGATGTCGGCATGCCATGGCTCCAGATAGATTGCGAACGCACCA 27570 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548 || | ||| || || ||||| || ||||| || || || | | | || | ||||| Sbjct 27569 GGACGCTTGTTTCCACCCTGGTCAACGTAGCGAGCAGTCGCATCGAAAACACGGAGCATA 27510 Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG 23608 || || || || ||||| | |||| | || | | || || | ||||| | | Sbjct 27509 GGAACTAGTCCATTGGATGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATG 27450 Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668 ||| |||| || ||| ||||| || | | || || ||||| || || ||| ||| Sbjct 27449 CGGTGCACGTTGAGACCAATGCCGCCAGCGGTCTTTGAGATCATAGCACAAGTTTTGAGA 27390 Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA-CACGAAGACAT 23727 ||||||||||| ||||| ||||||||||| || | | || |||||| || || || | Sbjct 27389 GTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCAAC-AAGAAAGCAGGAGGAAAG 27331 Query 23728 TTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATT 23787 ||||| || || || | || ||| || || || || ||||| |||||| | Sbjct 27330 TTGCGGTTGAGGTGTGCCTGCATTGAAAAGGGTAGGCGAAGCATGCGTGAAGTATTTGCT 27271 Query 23788 CGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGG 23846 ||||| ||| ||||| || | ||||| || ||||||||||||||||| || || | | Sbjct 27270 GGACATGTAG-TTGTAAGTCTGAATGGCAGCTTCAATGTCCTCTCCGTGGATGCCAACAG 27212 Query 23847 CGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACA 23903 | || ||||| ||||||| ||| || | || ||||| | |||| | ||| | | Sbjct 27211 CCACACGCATGATCATGTGTTGTGGACGCTCAGCGACCTT---GCCGCTTATTCGCAGTA 27155 Query 23904 GATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCA 23963 | || || || | | ||| || || ||||| || | ||||| || || | ||||| | Sbjct 27154 GGTACGATCGCTCAAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCTCTATCGTAGA 27095 Query 23964 CTATGGCCGAATTCAAACGGTACGCATTGGCAGC--GATGATGTTGTAATGAAAATTCGA 24021 | ||||| || |||| || ||| | || | || | | ||||| | ||| Sbjct 27094 CAATGGCAGAGTTCAGTTCGTCCGCGT--GCTTCATGACGGTATTGTATGTGGTGTCCGA 27037 Query 24022 TATCATCGGCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCATACATATCGATAATGAC 24081 |||||| || ||| | ||||||||| ||| || || | || ||||| Sbjct 27036 TATCATAGGACATTTCTTATTGTTCTTTGGATTGATGTAATCGTAGAGGTCTTGGATGAC 26977 Query 24082 ATC-GAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCAA 24140 | | || || | ||||| |||| |||||| | ||| |||||||| | | ||||| | Sbjct 26976 AGCAGAGAATTGCTTCTTT-GTCTGCTTGTGGAGATTTGACACGGCAATACGTGCCGCGA 26918 Query 24141 GCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGC 24189 | | | ||||||| ||| || ||||||| || || ||||| || Sbjct 26917 GGATTGCGTAGTCGGGATGTGTGACGGTCATGTAGGCAGCTGTCTCAGC 26869 Score = 149 bits (164), Expect = 6e-31 Identities = 387/577 (67%), Gaps = 20/577 (3%) Strand=Plus/Minus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| || | || ||| | |||| |||||||| ||||| Sbjct 29001 TCTTGGTCAACAGTGAACTGAATAGGTGCTGAGGCAGCCATGGTTCGAAGATAGTACATT 28942 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||||| |||| ||||| | |||||| || ||||| | ||| || | Sbjct 28941 CCAGTCTTCAAGCCCAATTTCCAGCCAGCAAAATGCATGGACGTGATTTTGCCCATGGTA 28882 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | ||||| | || || |||| |||||||||||||| || ||||||||| Sbjct 28881 GGCTCCTTCATGTGAATGTTCAAGCTCTGAGATTGATCGATAAACGCACCACGATCGGCG 28822 Query 22283 GCCATATTTATCAATGTACGCATCGAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 ||||| | || | ||||| | ||| || ||||| ||||||||||| || | ||| Sbjct 28821 GCCATTGTGATGATGGTACG--TTGACTGATCTCCCAGACGGTCTTGTAGAGAGCCTTGA 28764 Query 22341 TCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT 22399 | || | ||| | | | || | || | || || | | ||||| ||| Sbjct 28763 TGTC-ATCGGGGATGTTGGGAATGTTTTGAATAGAACCACCCTCGGCAATGATGCGATTC 28705 Query 22400 TTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCA 22457 || || | || ||| | ||| || || | ||| |||| || ||| |||| | Sbjct 28704 TTCATATTGTCAGACCAGAGACCCATCTCGACGAGATCCTTGAGTAGCCATG--GGTTGA 28647 Query 22458 CCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCG 22516 | ||||| || ||||| | |||| || || ||| ||| ||||| || || | |||||| Sbjct 28646 CGACTTGGAATTCGCCAG-CAAGCACACGTCGTGAGTAGATGTTCGACGTATATGGTTCG 28588 Query 22517 AAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGT 22576 ||| | |||||| ||||| || |||| || || || || ||||| || |||| | Sbjct 28587 AAACACTCATTGAAGCCCAGAATTTGAGATGTGGAGGCAGTTGGCATTGGGGCCACTAAA 28528 Query 22577 AGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGC--ATCGACCAGTCCCACA 22634 |||||||| | | |||||||||| || | | ||||||| ||| ||||||||| | Sbjct 28527 AGCGAGTTGCGGACGCCGTGCTTTTTTATATCAGCCTTGAGCGAATC--CCAGTCCCAGA 28470 Query 22635 GATCGGACGGCGTCACATTGTCCCACATATCGTATTG 22671 |||| | || || || || |||||| || ||||| Sbjct 28469 GATCTGTTGGTGTGAC---GTTCCACATGTCATATTG 28436 >seq18 Length=328773 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||| || || || |||| |||||| | ||| Sbjct 244390 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATTACGCTCGAAGTTGAATCTTCC 244449 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| || ||| ||||||||| || | || || ||||| Sbjct 244450 GATACGATCGACAACGTCAAGACGAAAATCCAGGACAAGGAGGGTATTCCACCAGACCAA 244509 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || || ||||| || || || |||||||| | | | || |||||||||| || Sbjct 244510 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGA-TGGACGTACGTTGAGCGATTACAA 244568 Query 31372 CATTCAAAAAGAATCGAC 31389 |||||| || || ||||| Sbjct 244569 CATTCAGAAGGAGTCGAC 244586 >seq171 Length=70297 Score = 111 bits (122), Expect = 1e-19 Identities = 341/519 (66%), Gaps = 10/519 (2%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| || | || ||||| | || | |||||||| | | Sbjct 54934 CAAGAAGGCTGACTGGGCATTGAAGTGGATCTGCGATGACAATTCTACGTTCGCGTCGCG 54875 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATAT 58032 ||| |||| |||||||| |||||||| || || ||| | | ||||| || | || | Sbjct 54874 CCTAGTCGCATTCGCCGCTGTCGAAGGCATCTT-TTTCAGTGGTGCTTTCGCATCCATTT 54816 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| | |||||||| || || ||||||||| |||| ||| ||||||| | || || | Sbjct 54815 TCTGGCTCAAGAAACGTGGTCTCATGCCCGGCTTGACCTTTTCCAACGAGCTCATCTCTC 54756 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 |||||||||| | || || || ||||| || || | | ||| || | ||| || | Sbjct 54755 GCGACGAGGGAATGCACACCGACTTTGCCTGTCTCCTTTTCTCACAACTCAACAAGAAGC 54696 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | | | || || | ||| ||||| ||||| || || || | || || Sbjct 54695 CTGCTCCTGAAGCTGTCCGCGCCATCATCACGGAGGCAGTTCAAATTGAGCAAGAATTCT 54636 Query 58213 TCACCGAAGCCCTACC-GGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 | | ||| || ||||| | | | ||||||| ||||| | | |||| | ||| Sbjct 54635 TGAGCGAGGCACTACCATGCAGAC-TGCTCGGCATGAATTCAGGGCTCATGTGCCAATAC 54577 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT---GATTGGAGAGCGTCATTACAAC 58328 ||||||||||| || || | || ||||| | ||| | || || ||| || || Sbjct 54576 ATTGAGTTTGTCGCTGATCGTCTCTTGCTTGCACTCGGCAATGTCAAG-GTC--TATAAT 54520 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 | ||||| || || || ||| | ||||| |||| || |||||||| || ||| Sbjct 54519 GCTGTGAATCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACAAATTTCTTC 54460 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 || ||| || | || || || || |||||||||| Sbjct 54459 GAGAAACGTGTCGGTGATTACCAGAAGGCCGGCGTGATG 54421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763363216400