Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq171 93.3 4e-14 >seq171 Length=70297 Score = 93.3 bits (102), Expect = 4e-14 Identities = 329/504 (65%), Gaps = 9/504 (2%) Strand=Plus/Minus Query 52561 CGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAA 52620 ||||| |||| ||| ||||||||||| |||||| | ||||| | || || || Sbjct 54936 CGCAAGAAGGCTGACTGGGCATTGAAGTGGATCTGCGATGACAATTCTACGTTCGCGTCG 54877 Query 52621 CGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATA 52680 || || ||||| || || || ||||| | ||||| ||| ||| || | || Sbjct 54876 CGCCTAGTCGCATTCGCCGCTGTCGAAGGCATCTTTTTCAGTGGTGCTTTCGCATCCATT 54817 Query 52681 TTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATC 52739 || | |||| || | ||| | | ||||||||| | || ||| ||||||| | || || Sbjct 54816 TTCTGGCTCAAGAAACGTGGTC-TCATGCCCGGCTTGACCTTTTCCAACGAGCTCATCTC 54758 Query 52740 GCGCGACGAAGGAATGCACACAGATTTTGCGTGT-TTGTATTATAATACGCGCGTTAAAG 52798 |||||||| ||||||||||| || ||||| ||| | | || | | | | | ||| Sbjct 54757 TCGCGACGAGGGAATGCACACCGACTTTGCCTGTCTCCTTTTCTCACA-ACTC-AACAAG 54700 Query 52799 AAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAAG 52858 || | || |||| | | | ||| | | ||||| || | ||||| ||| Sbjct 54699 AAGCCTGCTC--CTGAAGCTGTCCGCGCCATCATCACGGAGGCAGTTCAAATTGAGCAAG 54642 Query 52859 AGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCG 52918 | || || | || || |||| | || | |||||||| | | |||||| Sbjct 54641 AATTCTTGAGCGAGGCACTACCATGCAGACTGCTCGGCATGAATTCAGGGCTCATGTGCC 54582 Query 52919 AGTACATCGAGTTTGTTGCGGACAGACTGTTG-ATGCAGCTCGGTCAGCCGAAATACTAT 52977 | ||||| |||||||| || || | || ||| |||| ||||| | || |||| Sbjct 54581 AATACATTGAGTTTGTCGCTGATCGTCTCTTGCTTGCA-CTCGGCAATGTCAAGGTCTAT 54523 Query 52978 AATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTT 53037 ||||| || ||||| || ||| | ||||| || |||| || || ||||| || Sbjct 54522 AATGCTGTGAATCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACAAATTTC 54463 Query 53038 TTCGAGAGACGTGTGGGCGAGTAC 53061 ||||||| |||||| || || ||| Sbjct 54462 TTCGAGAAACGTGTCGGTGATTAC 54439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060620564000