Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq268 100 4e-16 >seq268 Length=30626 Score = 100 bits (110), Expect = 4e-16 Identities = 301/464 (65%), Gaps = 3/464 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || |||||||| || | || || || | || || ||||||||||| || || || | Sbjct 28989 GTGAACTGAATAGGTGCTGAGGCAGCCATGGTTCGAAGATAGTACATTCCAGTCTTCAAG 28930 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | |||| || ||||||||| ||| | |||| | |||| || ||| Sbjct 28929 CCCAATTTCCAGCCAGCAAAATGCATGGACGTGATTTTGCCCATGGTAGGCTCCTTCATG 28870 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 ||||| |||| |||| ||||||||| || || || | || || |||||| | ||| Sbjct 28869 TGAATGTTCAAGCTCTGAGATTGATCGATAAACGCACCACGATCGGCGGCCATTGTGATG 28810 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || ||| || ||||| | || || || | ||| || || || || | | Sbjct 28809 ATGGTACGTTGACTGATCTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCATCGGGGATG 28750 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 || | | || ||||| || ||||| || ||||| || | ||| || || | ||| | Sbjct 28749 TTGGGAATGTTTTGAATAGAACCACCCTCGGCAATGATGCGATTCTTCATATTGTCAGAC 28690 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | ||||| | | | | || || || || || ||||| ||||| ||| Sbjct 28689 CAGAGACCCATCTCGACGAGATCCTTGAGTAGCCATGGGTTGACGACTTGGAATTCGCCA 28630 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | | || | || | ||| || || ||||| ||||| | ||||||| ||| Sbjct 28629 GCAAGCACACGTCGTGAGTAGATGTTCGACGTATATGGTTCGAAACACTCATTGAAGCCC 28570 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 | |||||||| || || ||||| ||||| || ||||| || || Sbjct 28569 AGAATTTGAGATGTGGAGGCAGTTGGCATTGGGGCCACTAAAAG 28526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134627864200