Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq171 120 5e-22 seq246 93.3 6e-14 >seq171 Length=70297 Score = 120 bits (132), Expect = 5e-22 Identities = 328/498 (66%), Gaps = 17/498 (3%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || |||||| | |||| | ||||||| || ||||| ||| ||| ||| Sbjct 54939 ATTCGCAAGAAGGCTGACTGGGCATTGAAGTGGATCTGCGATGACAATTCTACGTTCGCG 54880 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | || || ||||||||||| || || |||||||| || ||| ||| || || Sbjct 54879 TCGCGCCTAGTCGCATTCGCCGCTGTCGAAGGCATCTTTTTCAGTGGTGCTTTCGCATCC 54820 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 || || ||||||||||| || || ||||||||||| |||| |||||| | || Sbjct 54819 ATTTTCTGGCTCAAGAAACGTGGTCTCATGCCCGGCTTGACCTTTTCCAACGAGCTCATC 54760 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCG 125599 ||||| |||||||| | ||| ||||||||| ||| || || || ||||| | Sbjct 54759 TCTCGCGACGAGGGAATGCACACCGACTTTGCCTGTCTCCTTTTCTCACAACT-----CA 54705 Query 125600 TCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGAT 125659 | || | | ||| |||| ||| | ||| | || || || || || Sbjct 54704 ACAAGAAGCCTGCTCC-----TGAAGCTGTCCGCGCCATCATCACGGAGGCAGTTCAAAT 54650 Query 125660 AGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCT 125719 || ||||| || | | ||| | ||||| ||| || | |||||||| | ||| Sbjct 54649 TGAGCAAGAATTCTTGAGCGAGGCACTACCATGCAGACTGCTCGGCATGAATTCAGGGCT 54590 Query 125720 AATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG-TACGAGTTG--ATTGGCCG 125776 |||||| | ||||| |||||||| || |||||||| || | | | | | || Sbjct 54589 CATGTGCCAATACATTGAGTTTGTCGCTGATCGTCTCTTGCTTGCACTCGGCAATG---T 54533 Query 125777 CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAA 125836 |||| | || || || ||||||||| || |||||| | ||| || || | || || Sbjct 54532 CAAGGTCTATAATGCTGTGAATCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGGAAA 54473 Query 125837 GACCAACTTTTTCGAGAA 125854 ||| || || |||||||| Sbjct 54472 GACAAATTTCTTCGAGAA 54455 >seq246 Length=38480 Score = 93.3 bits (102), Expect = 6e-14 Identities = 154/216 (71%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || || || || || || || ||||| || ||| | |||| || || | |||| Sbjct 651 AAGAAGGTGACCTTGGACCGGTCTATGGATTTCAATGGCGTCACTTCGGAGCCGAATATG 710 Query 70122 TAGACTGCGAGA-CAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGA 70179 ||||| |||| | |||| ||| | ||||| || || ||||||||| |||| | || | || Sbjct 711 TAGAC-GCGAAAACAGATTATACCGGTCAAGGCGTGGATCAATTGGCAGATA-TCGTCGA 768 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || || |||| ||| || || | | || | || || |||||||||||||||| Sbjct 769 CAAACTGAAGAACAAGCCTTACGACCGCCGAATTATCTTGAGCGCATGGAATCCTGCAGA 828 Query 70240 TTTGCACCAAATGGCACTACCACCGTGTCAC-TGTT 70274 | || | | |||||||| || || || ||| |||| Sbjct 829 TCTGAAGAAGATGGCACTGCCGCCCTGCCACATGTT 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054151534200