Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq268 140 4e-28 >seq268 Length=30626 Score = 140 bits (154), Expect = 4e-28 Identities = 469/721 (65%), Gaps = 12/721 (2%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||| | ||||| || | || | | | || ||||| || || | || ||||||| || | Sbjct 27791 TCGTATTCGTCGCCATATACTTCGGCAAGGCCAGGGCACTCGTGAGGGCACATCAGCGTC 27732 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63111 || || ||| | | || || ||||| || || || |||||||| | || || ||| Sbjct 27731 CATTCGGCGTTCTGTTCAACACGCTTCATGAACAGGTCTGGAATCCACAAGGCGTAGAAA 27672 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| | | | || || || || |||||| | || || | | | Sbjct 27671 -AGATCACGAGCACGCGCCTCTTCTTTACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAA 27613 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || || | |||||| || |||| || || || | | ||||| || |||||||| || Sbjct 27612 GATGTCGGCATGCCATGGCTCCAGATAGATTGCGAACGCACCAGGACGCTTGTTTCCACC 27553 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | ||| || || |||| | | ||| |||| | |||||||| Sbjct 27552 CTGGTCAACGTAGCGAGCAGTCGCATCGAAAACACGGAGCATAGGAACTAGTCCATTGGA 27493 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGA 63349 ||| || || || ||| || || |||| |||| || || | | ||| ||| Sbjct 27492 TGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGGTGCACGTTG--AGA 27435 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || || || | || ||||| | || || ||| | || || ||||| ||| Sbjct 27434 CCAATGCCGCCAGCGGTCTTTGAGATCATAGCACAAGTTTTGAGAGTGTCGTAGATACCC 27375 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || || || ||| |||||| || ||||| ||| || | ||| | || || Sbjct 27374 TCAATGCTGTCCTCCTTCATGTCAACAAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTG 27315 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTA 63528 || ||||| || | |||||| ||||| || || || |||| || | |||| ||||| Sbjct 27314 CCTGCATTGAAAAGGGTAGGCGAAGCATGCGTGAAGTATTTGCTGGACATGTAG-TTGTA 27256 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 |||| ||| || | || || ||| | || || || || || |||||||| | ||| Sbjct 27255 AGTCTGAATGGCAGCTTCAATGTCCTCTCCGTGGATGCCAACAGCCACACGCATGATCAT 27196 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 ||| || || | ||| ||| |||| | ||||| || | ||| ||| || | || Sbjct 27195 GTGTTGTGGACGCTCAGCGACCTTGCCGCTTATTCGCAGTAGGTACGATCGCTCAAGCGT 27136 Query 63649 TTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || ||||| || | ||| ||||| |||| ||||| | ||| | ||||| ||| Sbjct 27135 CTTGAAGCCAAAGTATTGGTAGTTGAAA--TCTCTATCGTAGACAATGGCAGAGTTCAGT 27078 Query 63707 T 63707 | Sbjct 27077 T 27077 Score = 86.0 bits (94), Expect = 8e-12 Identities = 298/462 (65%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| ||||| || || || || | | || || |||||||||||||| || || | Sbjct 28989 GTGAACTGAATAGGTGCTGAGGCAGCCATGGTTCGAAGATAGTACATTCCAGTCTTCAAG 28930 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || ||||||||| ||| | |||| | || || || Sbjct 28929 CCCAATTTCCAGCCAGCAAAATGCATGGACGTGATTTTGCCCATGGTAGGCTCCTTCATG 28870 Query 61970 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 || || |||| || | ||| ||||||||| || || || | || || |||||| | || Sbjct 28869 TGAATGTTCA-AGCTCTGAGATTGATCGATAAACGCACCACGATCGGCGGCCATTGTGAT 28811 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 || || ||| || ||||| | || || || | ||| || || || || | Sbjct 28810 GATGGTACGTTGACTGATCTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCATCGGGGAT 28751 Query 62089 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 ||| | | || ||||| || ||||| || || || || | |||||| || | ||| Sbjct 28750 GTTGGGAATGTTTTGAATAGAACCACCCTCGGCAATGATGCGATTCTTCATATTGTCAGA 28691 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | ||||| | | | | || || || || || ||||| ||||| || Sbjct 28690 CCAGAGACCCATCTCGACGAGATCCTTGAGTAGCCATGGGTTGACGACTTGGAATTCGCC 28631 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | || | || | ||| || || ||||| ||||| | | ||||||| || Sbjct 28630 AGCAAGCACACGTCGTGAGTAGATGTTCGACGTATATGGTTCGAAACACTCATTGAAGCC 28571 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62307 || |||||||| || || ||||| ||||| || ||||| || Sbjct 28570 CAGAATTTGAGATGTGGAGGCAGTTGGCATTGGGGCCACTAA 28529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627683382000