Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18 125 6e-24 seq13 100 2e-16 >seq18 Length=328773 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||| || |||| || ||||||| || || || Sbjct 244390 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATTACGCTCGAAGTTGAATCTTCC 244449 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| |||||| ||||| || || |||||||| |||||| Sbjct 244450 GATACGATCGACAACGTCAAGACGAAAATCCAGGACAAGGAGGGTATTCCACCAGACCAA 244509 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || ||||| ||||||| || || || |||||||||| Sbjct 244510 CAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGATGGACGTACGTTGAGCGATTACAAC 244569 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || | || || ||||| Sbjct 244570 ATTCAGAAGGAGTCGACCTTGCACTTGGTGCT 244601 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| ||||| |||| || | || |||||||| || Sbjct 244162 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATTACCTTGGAGGTGGAGTCCTCG 244221 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || ||||| |||||| Sbjct 244222 GACACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAA 244281 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | || || | |||||| || ||| ||||| Sbjct 244282 CAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACATTGTCCGACTACAAC 244341 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || || || || |||||||| || || || ||| Sbjct 244342 ATCCAGAAGGAGTCCACGCTGCACTTGGTTCTA 244374 >seq13 Length=375566 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || || |||| || | || || ||||| || ||||| ||| Sbjct 314853 TTCGTCAAGACCCTAACGGGAAAGACCATAACTCTTGAGGTTGAGTCCTCAGACACCATC 314912 Query 25068 GA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 || |||| || ||| | | | ||||||||||| |||||||| || |||||||| Sbjct 314913 GATAATGTCAA--AACCAAGATACAA--GACAAAGAAGGAATTCCACCAGATCAACAGCG 314968 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | | || || ||||| || |||||||| |||| |||||| || |||| ||||| || || Sbjct 314969 GTTGATCTTCGCCGGGAAGCAATTAGAGGATGGACGCACTTTGAGCGACTACAACATCCA 315028 Query 25184 AAAAGAATC 25192 || | ||| Sbjct 315029 GAAGGTATC 315037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325121754175