Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq171 134 3e-26 seq5 113 9e-20 >seq171 Length=70297 Score = 134 bits (148), Expect = 3e-26 Identities = 318/477 (67%), Gaps = 5/477 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | ||| || | |||||||| |||||||||||||||||| || Sbjct 54458 TCGAAGAAATTTGTCTTTCCGGCGAGAGAGATGTTCTCCATGAAGTCGAAGGGATTCACA 54517 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||||| || |||| || ||| ||||| | |||| || || || |||||||| | Sbjct 54518 GCATTATAGACCTTGACATTGCCGAGTGCAAGCAAGAGACGATCAGCGACAAACTCAATG 54577 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||| || | || |||||||| | || | || || | |||||| | | | Sbjct 54578 TATTGGCACATGAGCCCTGAATTCATGCCGAGCAGTCTGCATGGTAGTGCCTCGCTCAAG 54637 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 ||||| | || | |||||||||| | || || || | | ||| || Sbjct 54638 AATTCTTGCTCAATTTGAACTGCCTCCGTGATGATGGCGCGGACAGCTTCAGGAGCAGGC 54697 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 || || | || | |||| | ||||| | |||| | ||||| |||||||||||| Sbjct 54698 TTCTTGTTGAGTTGTGAGAAAAGGAGACAGGCAAAGTCGGTGTGCATTCCCTCGTCGCGA 54757 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| ||||||||| | || ||| ||||| | ||||| ||| |||||||||| Sbjct 54758 GAGATGAGCTCGTTGGAAAAGGTCAAGCCGGGCATGAGACCACGTTTCTTGAGCCAGAAA 54817 Query 251923 ATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 || | || |||| | ||| ||| | | || |||||| | |||| || ||||| Sbjct 54818 ATGGATGCGAAAGCA-CCACTGAAAAAGATGCCTTCGACAGCGGCGAATGCGACTAGGCG 54876 Query 251982 CTCAGCAAAC---GACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 | || ||| || ||||| | | | ||||| |||||| | |||||||| Sbjct 54877 CGACGCGAACGTAGAATTGTCATCGCAGATCCACTTCAATGCCCAGTCAGCCTTCTT 54933 >seq5 Length=598103 Score = 113 bits (124), Expect = 9e-20 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| |||||||| || ||||||||||| |||||||| || ||| |||| ||||| | | Sbjct 331052 AGTCGGTTCTCTCTCTGGTGGTTGGAAAATGAAGCTCGCGCTCGCTCGTGCCATGTTGTT 330993 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGA 279799 |||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 330992 GCGTGCCGATGTTCTCCTGCTTGACGAGCCAACTAACCACTTGGA 330948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829622808345