Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18 185 2e-41 seq13 134 3e-26 seq171 111 3e-19 seq3 95.1 2e-14 seq16 91.5 3e-13 >seq18 Length=328773 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| ||||||||||| || |||||||| || ||||| Sbjct 244388 CCACCGCGGAGACGTAGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 244329 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || || || | |||||| ||||| || || || | |||||||| ||||| Sbjct 244328 AATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGG 244269 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 244268 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCACC 244209 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| || ||||| | |||||| ||||| |||||||| Sbjct 244208 TCCAAGGTAATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || || ||||| || | |||||||| | || ||||| || || ||||| || Sbjct 244623 TTAGTTGCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTA 244564 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 |||| | || | |||||||| || ||||| |||||||| ||||| | |||||||| Sbjct 244563 ATCGCTCAACGTACGTCCATCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTC 244504 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 |||||||| || |||||||| || || || | ||||||| ||||| || || | || Sbjct 244503 TGGTGGAATACCCTCCTTGTCCTGGATTTTCGTCTTGACGTTGTCGATCGTATCGGAAGA 244444 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| | || ||||| || || ||||| ||||||||||| || ||||| Sbjct 244443 TTCAACTTCGAGCGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 Score = 127 bits (140), Expect = 4e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || ||||| || || |||||||| || || ||| Sbjct 244160 CCACCACGAAGGCGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAG 244101 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || |||||||| || | | || ||||| ||||| Sbjct 244100 AGGGTTCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 244041 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || |||||||||||||||||||| | ||| || ||||||||||| ||| || || || Sbjct 244040 ATTCCTTCCTTGTCTTGAATCTTGGTCTTCACATTGTCGATGGTGTC-GCTGGACTCAAC 243982 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 243981 CTCGAGGGTGATGGTCTTGCCAGT 243958 >seq13 Length=375566 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||| | || | ||||| ||||| |||||||||||||| || Sbjct 315031 TTCTGGATGTTGTAGTCGCTCAAAGTGCGTCCATCCTCTAATTGCTTCCCGGCGAAGATC 314972 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||||| || |||||||| ||||| |||||||| ||||| | ||||| ||| Sbjct 314971 AACCGCTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGTATCTTGGTTTTGACATTATCG 314912 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||||| || || || || | || ||||| |||||||| |||||||||||||| Sbjct 314911 ATGGTGTCTGAGGACTCAACCTCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTGACGAA 314853 >seq171 Length=70297 Score = 111 bits (122), Expect = 3e-19 Identities = 265/401 (66%), Gaps = 0/401 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| ||||| ||||||||||| || || || ||||||||| || | ||| || | Sbjct 54421 CATCACGCCGGCCTTCTGGTAATCACCGACACGTTTCTCGAAGAAATTTGTCTTTCCGGC 54480 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||| || ||| |||||||||||| ||||| ||| | || | | |||| | || Sbjct 54481 GAGAGAGATGTTCTCCATGAAGTCGAAGGGATTCACAGCATTATAGACCTTGACATTGCC 54540 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 |||||| || | || ||||| || ||||| ||||| |||| ||| || | || || Sbjct 54541 GAGTGCAAGCAAGAGACGATCAGCGACAAACTCAATGTATTGGCACATGAGCCCTGAATT 54600 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | ||| || | || |||| | ||| || | || | || || Sbjct 54601 CATGCCGAGCAGTCTGCATGGTAGTGCCTCGCTCAAGAATTCTTGCTCAATTTGAACTGC 54660 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 ||| || |||| || | ||| | | |||| || | ||| | || | || Sbjct 54661 CTCCGTGATGATGGCGCGGACAGCTTCAGGAGCAGGCTTCTTGTTGAGTTGTGAGAAAAG 54720 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 ||| |||| | ||| | ||||||||||| ||||| ||||||||| || Sbjct 54721 GAGACAGGCAAAGTCGGTGTGCATTCCCTCGTCGCGAGAGATGAGCTCGTTGGAAAAGGT 54780 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG 10335 || ||||||||||| || || || ||||||||||||| Sbjct 54781 CAAGCCGGGCATGAGACCACGTTTCTTGAGCCAGAAAATGG 54821 >seq3 Length=638895 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225772 GTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCA 225830 ||| | |||||| || |||||||| ||| || || | || | |||||||||||| | Sbjct 110568 GTCCAAGTCGTGCTCGACGTACACGGTCTTGACCTCGCTCTGCTT-GGGGAAGCCCTCAA 110510 Query 225831 GCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGA 225890 ||| | || || || || | || ||| |||| || | |||||| || || | || Sbjct 110509 CCTGTTCGTTATTGATGGCGCGCATGAGTGTAGTCTTTCCGGAGCCGTTAGGTCCCAGGA 110450 Query 225891 GGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCAC 225950 | || ||| | | || ||||||| | ||| ||| ||||||||||||||| ||| Sbjct 110449 GACCATAACGCTGACCACGCTTGAGGCGGAGAGACGTCTGATTCAGGAGGATCTTGGCAC 110390 Query 225951 CATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||||| | | || ||||| ||||| || ||||||||||| Sbjct 110389 CATAGGCCAAGTTAAATGTGCAATTACACAGATCTTCACCCTCCTC 110344 >seq16 Length=359911 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| ||||||||||| || ||||| Sbjct 61082 CCGCCACGAAGTCGGAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAT 61141 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | ||| ||||| || ||| Sbjct 61142 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGTTGCTGGTCTGGAGGA 61201 Query 68355 ATGCCTTCCTTGTCT 68369 || |||||||||||| Sbjct 61202 ATCCCTTCCTTGTCT 61216 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || ||||| | |||||| || |||||||| | ||| || || || | |||||||||| Sbjct 61269 TGGATCTTGGTCTTGACATTGTCAATGGTGTCGGATGACTCCACCTCGAGGGTGATGGTT 61328 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| ||||| |||||||| Sbjct 61329 TTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 61360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616121447400