Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq171 176 9e-39 >seq171 Length=70297 Score = 176 bits (194), Expect = 9e-39 Identities = 361/522 (69%), Gaps = 21/522 (4%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC-GAGAGTCCCGACGCAAC 42691 |||||||| |||||||| |||||||| | || |||||| | || | | | | || Sbjct 54945 CCCTGCATTCGCAAGAAGGCTGACTGGGCATTGAAGTGGATCTGCGA-TGACAATTCTAC 54887 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 ||||| | | || || || || |||| ||||| |||||||| ||| || || || Sbjct 54886 GTTCGCGTCGCGCCTAGTCGCATTCGCCGCTGTCGAAGGCATCTTTTTCAGTGGTGCTTT 54827 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| ||||| |||||||||||| | ||| || |||||||| | ||||| || |||| Sbjct 54826 CGCATCCATTTTCTGGCTCAAGAAACGTGGTCTC-ATGCCCGGCTTGACCTTTTCCAACG 54768 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | |||||||| |||| | ||||||||||| ||||| ||||| | Sbjct 54767 AGCTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGTCTCCTTTTCTC---AC 54711 Query 42871 ACCTCAGGCACAAGCC--CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 | |||| | ||||| ||| | ||| ||||| ||||||||||||||||| || | Sbjct 54710 AACTCAACAAGAAGCCTGCTC-CTGAAGC-TGTCCGCGCCATCATCACGGAGGCAGTTCA 54653 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 || ||| | || ||| | | || | || || ||| |||||||||| | Sbjct 54652 AATTGAGCAAGAATTCTTGAGCGAGGCACTACCATGCAGACTGCTCGGCATGAATTCAGG 54593 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG-TGCCAGATGG--GTCT 43045 ||||||||| | ||||| ||| ||||| || | |||| || | || || | | Sbjct 54592 GCTCATGTGCCAATACATTGAGTTTGTCGCTGATCGTCTCTTGCTTGCACTCGGCAATGT 54533 Query 43046 CAGCCGCCTCTACAACACGCCGTG--CCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || | || || | || ||| ||||||||||| |||||||||||||| | | Sbjct 54532 CA-AGGTCTATA----ATGCTGTGAATCCCTTCGACTTCATGGAGAACATCTCTCTCGCC 54478 Query 43104 GGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || ||||| || || |||||||| || |||| || |||||| Sbjct 54477 GGAAAGACAAATTTCTTCGAGAAACGTGTCGGTGATTACCAG 54436 Score = 98.7 bits (108), Expect = 2e-15 Identities = 179/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| | ||| |||||| ||||| |||||||| || Sbjct 55331 ATCTGGCGTATGTACAAGAAGGCCATGGCCTCATTCTGGACTGCCGAAGAGATTGATCTC 55272 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 |||| || | | |||| | || | || | || ||||| || ||| || Sbjct 55271 TCCAAAGATGTTCCAGACTGGAACA-ACCGCCTCAACGACGACGAACGCTTCTTCATCTC 55213 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || || |||||||| || || |||||||| |||||||||||||| | | Sbjct 55212 CCACATCCTCGCATTCTTCGCAGCATCGGACGGCATTGTCAATGAGAACCTTCTCGAGCG 55153 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| || || || ||| || || || ||||||||||| |||||||| ||||| Sbjct 55152 ATTCAGCAATGAAGTCCAGGTTCCAGAAGCTCGATGCTTCTACGGTTTCCAGATCGCCAT 55093 Query 42536 AGAGAACGTGCACTCTGAG 42554 ||||| | ||||| ||| Sbjct 55092 GGAGAATATTCACTCCGAG 55074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332766689200