Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18 141 2e-28 seq171 102 2e-16 seq13 102 2e-16 >seq18 Length=328773 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || ||| | ||| ||||| ||||| ||||| ||||| |||||| Sbjct 244580 TCCTTCTGAATGTTGTAATCGCTCAACGTACGTCCATCTTCCAATTGCTTTCCGGCGAAG 244521 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || |||||||| ||| || || || || ||||||||||||| || ||||| Sbjct 244520 ATGAGGCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCCTGGATTTTCGTCTTGACGTTG 244461 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| ||||| ||||||||||| || ||||| ||||| |||||||||||| Sbjct 244460 TCGATCGTATCGGAAGATTCAACTTCGAGCGTAATGGTCTTGCCGGTGAGAGTCTTGACG 244401 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 244400 AAAATTTGCAT 244390 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| ||| || ||||| || ||||| | | Sbjct 244160 CCACCACGAAGGCGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAG 244101 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||||| || |||||||||| |||||| || |||| Sbjct 244100 AGGGTTCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGG 244041 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || || || || | ||||| || || || | ||||| || || || Sbjct 244040 ATTCCTTCCTTGTCTTGAATCTTGGTCTTCACATTGTCGATGGTGTCGCTGGACTCAACC 243981 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| ||||| ||||| || |||| Sbjct 243980 TCGAGGGTGATGGTCTTGCCAGTCA 243956 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | || | |||| || || ||||| || ||||||| Sbjct 244388 CCACCGCGGAGACGTAGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 244329 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | || || || || || ||||| |||||||| |||| Sbjct 244328 AATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGG 244269 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | || || || || Sbjct 244268 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCACC 244209 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 244208 TCCAAGGTAATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 >seq171 Length=70297 Score = 102 bits (112), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 269091 CATAATGGAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT 269150 ||| | ||| |||||| || || |||| ||| | | || || | ||||| | Sbjct 54670 CATCACGGAGGCAGTTCAAATTGAGCAAGAATTCTTGAGCGAGGCACTACCATGCAGACT 54611 Query 269151 GATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTT 269210 | |||| |||||| | | |||||| ||||| || || || || ||||||||| |||| Sbjct 54610 GCTCGGCATGAATTCAGGGCTCATGTGCCAATACATTGAGTTTGTCGCTGATCGTCTCTT 54551 Query 269211 CACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACT 269270 |||||||| ||| || || || ||| | ||||||||||| ||| ||||| Sbjct 54550 GCTTGCACTCGGCAATGTCAAGGTCTATAATGCTGTGAATCCCTTCGACTTCATGGAGAA 54491 Query 269271 AATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || |||| |||||||| || |||||||| || |||||| | || || || Sbjct 54490 CATCTCTCTCGCCGGAAAGACAAATTTCTTCGAGAAACGTGTCGGTGATTACCA 54437 >seq13 Length=375566 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || |||||| | |||||||| || |||||||| || || ||||||||| Sbjct 315031 TTCTGGATGTTGTAGTCGCTCAAAGTGCGTCCATCCTCTAATTGCTTCCCGGCGAAGATC 314972 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||||||| ||| ||||||||||| || || || || | ||| || || || Sbjct 314971 AACCGCTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGTATCTTGGTTTTGACATTATCG 314912 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || || || || || || ||||| || || || ||||||||||| Sbjct 314911 ATGGTGTCTGAGGACTCAACCTCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTGACGAA 314853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646162694510