Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq171 120 3e-22 seq18 107 2e-18 >seq171 Length=70297 Score = 120 bits (132), Expect = 3e-22 Identities = 348/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGC 52384 || || ||| ||||||| |||||| | |||||| ||||||||||| | || |||| | Sbjct 54948 GTCCCCTGCATTCGCAAGAAGGCTGACTGGGCATTGAAGTGGATCTGCGA-TGACAATTC 54890 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 ||| | || |||| | || || |||||| ||||| ||| | ||||| || | Sbjct 54889 TACGTTCGCGTCGCGCCTAGTCGCATTCGCCGCTGTCGAAGGCATCTTTTTCAGTGG-TG 54831 Query 52445 CTTT-GCCGCCATCTTTTACATTA--AAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 |||| || |||| || | | | ||||| || | ||||||||| |||| || Sbjct 54830 CTTTCGCATCCATTTTCTGGCTCAAGAAACG--TGGTCTCATGCCCGGCTTGACCTTTTC 54773 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACTA 52558 ||||||| | || || |||||||| ||| ||||||| |||||||| || ||| | || Sbjct 54772 CAACGAGCTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGTCTCCTTTTCT- 54714 Query 52559 CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGC 52618 || || | | | | || | | | || | ||| ||| ||| |||||| Sbjct 54713 CACAAC-----TCAACAAGAAGCCTGCTCCTGAAGCTGTCCGCGCCATCATCACGGAGGC 54659 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || || || | || || || | | || || || | ||||| |||||||| Sbjct 54658 AGTTCAAATTGAGCAAGAATTCTTGAGCGAGGCACTACCATGCAGACTGCTCGGCATGAA 54599 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG-GTGCAGCTCG 52737 | | ||||||| | ||||| |||||||| || |||||||| ||| |||| |||| Sbjct 54598 TTCAGGGCTCATGTGCCAATACATTGAGTTTGTCGCTGATCGTCTCTTGCTTGCA-CTCG 54540 Query 52738 GGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 | | | ||| || || || ||| ||||| || || || ||| | ||||| || || Sbjct 54539 GCAATGTCAAGGT-CTATAATGCTGTGAATCCCTTCGACTTCATGGAGAACATCTCTCTC 54481 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || ||||| || || |||||||| || ||||| || || Sbjct 54480 GCCGGAAAGACAAATTTCTTCGAGAAACGTGTCGGTGATTA 54440 >seq18 Length=328773 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | | |||||||| ||||||||||| ||||| Sbjct 244617 GCCGCCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCT 244558 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || | ||| || |||| |||| || ||||||||||| || || Sbjct 244557 CAACGTACGTCCATCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGG 244498 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || ||||| || |||| || || | ||| || | || |||| || || Sbjct 244497 AATACCCTCCTTGTC-CTGGATTTTCGTCTTGACGTTG-TCGATCGTATCGGAAGATTCA 244440 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| ||| | || || || || ||||| || || ||||| ||||| Sbjct 244439 ACTTCGAGCGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | |||||||| || |||||||||||| | Sbjct 244388 CCACCGCGGAGACGTAGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAC 244329 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| | | || || ||||||||||| || || Sbjct 244328 AATGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGG 244269 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| || || || | |||| | | |||||| | ||||||| Sbjct 244268 ATGCCCTCCTTGTCCTGGATCTTG-GTCTTGACGTTGT-CGATGGTGTCCGAGGACTCCA 244211 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| |||| || || || || |||||||| Sbjct 244210 CCTCCAAGGTAATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 Score = 93.3 bits (102), Expect = 4e-14 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | || || ||||||||| ||||| |||| Sbjct 244127 GATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCCTCGAGCTGTTTGCCGGCG 244068 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| | |||||| |||||||| || || ||||| ||||| ||| | || || || Sbjct 244067 AAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC-TTGAATCTTGGTCTTCAC 244009 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||| || | ||||||| | ||||| ||||||| || | || || ||||||| Sbjct 244008 ATTG-TCGATGGTGTCGCTGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCA 243956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259019212400