Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq268 89.7 6e-13 >seq268 Length=30626 Score = 89.7 bits (98), Expect = 6e-13 Identities = 344/535 (64%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 116752 TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA 116811 ||||| ||||||||||| |||||||| ||||| | || |||| ||||| ||| || Sbjct 27716 TCAACACGCTTCATGAACAGGTCTGGAATCCACAAGGCGTAGAAAAGATCACGAGCACGC 27657 Query 116812 GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCAC 116871 || ||||| | || || || | || ||||| ||| | ||| || || ||||| Sbjct 27656 GCCTCTTCTTTACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAAGATGTCGGCATGCCAT 27597 Query 116872 GGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATAC 116925 || ||||| || | |||| | || | |||| ||| |||||| || || Sbjct 27596 GGCTCCAGATAGATTGCGAACGCACCAGGACGCTTG---TTTCCACCCTGGTCAACGTAG 27540 Query 116926 CTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTC 116985 | || || || | || || || ||||| |||| | |||| ||| ||| ||||| Sbjct 27539 CGAGCAGTCGCATCGAAAACACGGAGCATAGGAACTAGTCCATTGGATGTGCCGTTTGTT 27480 Query 116986 CCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCC 117045 || | ||| || |||||| || ||| | || | |||||| || || || Sbjct 27479 CCTCCAATGTATGATCCAGTGGCTCGGATGCGGTGCACGTTGAGACCAATGCCGCCAGCG 27420 Query 117046 CACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCC 117105 ||||||||| || || ||||| || ||||||| || || || ||| || Sbjct 27419 GTCTTTGAGATCATAGCACAAGTTTTGAGAGTGTCGTAGATACCCTCAATGCTGTCCTCC 27360 Query 117106 TTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGG 117165 || | | | || |||||| || | ||| || ||||| || || ||||| ||| Sbjct 27359 TTCATGTCAACAAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTGCCTGCATTGAAAAGG 27300 Query 117166 GTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAG 117223 || || | || || |||| || ||| |||||| | | ||| |||| | | ||| Sbjct 27299 GTAGGCGAAGCATGCGTGAA-GTA-TTTGCTGGACATGTAGTTGTAAGTCTGAATGGCAG 27242 Query 117224 AGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||||| || ||||| || || | | || ||||| | ||||| ||| || Sbjct 27241 CTTCAATGTCCTCTCCGTGGATGCCAACAGCCACACGCATGATCATGTGTTGTGG 27187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503020482200