Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq18 123 6e-23 seq16 113 1e-19 seq13 89.7 1e-12 >seq18 Length=328773 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||||||||||| || | |||||| || ||| || Sbjct 244610 CGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCTCAACGTA 244551 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| |||||||||||||||||||| ||||| ||||| || ||| || Sbjct 244550 CGTCCATCTTCCAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGAATACCC 244491 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| ||| |||| || || | | ||| || || | | Sbjct 244490 TCCTTGTCCTGGATTTTCGTCTTGACGTTGTCGATCGTATCGGAAGATTCAACTTCGAGC 244431 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| || || |||||||| Sbjct 244430 GTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATTTG 244393 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||||||||| || || ||||| |||| ||||||||| | | || Sbjct 244154 CGAAGGCGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTT 244095 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||| || ||||||||||| | ||||||||||||||| |||||| Sbjct 244094 CGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCT 244035 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| |||| |||||| | | || || || | Sbjct 244034 TCCTTGTCTTGAATCTTGGTCTTCACATTGTCGATGGTGTCGCTGGACTCAACCTCGAGG 243975 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 243974 GTGATGGTCTTGCCAGT 243958 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | ||| || | || || Sbjct 244373 AGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCGTCC 244314 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| || || || ||||| ||||| || || || || ||| Sbjct 244313 TCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCC 244254 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || ||||| || || ||| Sbjct 244253 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTAATGGTC 244194 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| | || ||||| || || || Sbjct 244193 TTACCCGTCAAGGTCTTCACGAAGATCTG 244165 >seq16 Length=359911 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || ||||||||||||||||||||||||| ||||||||| | | ||| Sbjct 61088 CGAAGTCGGAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGATAGAGTG 61147 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || ||||||||||| |||||||| | || |||||||| ||| ||| ||| Sbjct 61148 CGGCCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGTTGCTGGTCTGGAGGAATCCCT 61207 Query 199529 TC 199530 || Sbjct 61208 TC 61209 >seq13 Length=375566 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| |||||| | |||||| || | ||||| |||||||||| Sbjct 315033 CCTTCTGGATGTTGTAGTCGCTCAAAGTGCGTCCATCCTCTAATTGCTTCCCGGCGAAGA 314974 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||| || || || |||||||||| || || ||||| || || | Sbjct 314973 TCAACCGCTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGTATCTTGGTTTTGACATTAT 314914 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||||| | || || || | || || ||||| ||||| || || || || | Sbjct 314913 CGATGGTGTCTGAGGACTCAACCTCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTGACGA 314854 Query 199620 AA 199621 || Sbjct 314853 AA 314852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913367811515