Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq23 273 3e-68 seq11 114 2e-20 seq4 86.0 8e-12 >seq23 Length=300837 Score = 273 bits (302), Expect = 3e-68 Identities = 486/701 (69%), Gaps = 16/701 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||||||||| || | || || || || ||||| | |||||||| ||||| || Sbjct 258498 TCAAAATCTTCACCCCCGAGATGCGTGTCACCGGCGGTAGACTTGACTTCGAAGATGCCC 258439 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | | | || ||||| || || || ||||| ||||| |||||||| || Sbjct 258438 TCTTCGATGGTGAGGAGGGAGACATCGAAGGTTCCGCCACCGAGGTCGAAAATGAGGACA 258379 Query 7577 TTCGTATCG-TCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 || ||| || | || ||||| ||||||||||| || || || || || ||||| Sbjct 258378 TT----TCGCTCTCCGGTGGCCTTCTTGTCGAGACCGTAGGCAATGGCGGCGGCGGTTGG 258323 Query 7633 TTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 || || |||||||| || ||| || ||||| || || | || || || || |||| Sbjct 258322 CTCGTTGATAATACGGAGGACA-TTGAGGCCGGCGATGAGACCGGCGTCCTTGGTGGCTT 258264 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 |||||||||| ||||| |||||||| ||||| || ||||| |||| |||| | | Sbjct 258263 GTCGTTGCGAGTCGTTGAAGTAGGCTGGGACTGTGACGACGGCGTTGTTGACGGTGCCTC 258204 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 |||| || || || || | ||| ||| ||||| | | |||||| || || ||||| | Sbjct 258203 CGAGGTATGACTCAGCTGTCTCTCGCATCTTGGTCAAGATCATCGAAGAGATTTCTTCTG 258144 Query 7812 CCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 || || || || || || || || || | | | | || || |||| | Sbjct 258143 GCGTGAAAGTCTTAGTCTCGCCCTTGAACTCGATCTGGACAACAGGCTT-GCCGC--CCT 258087 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | || ||||| | | | | ||||||||| | ||||||| |||| |||| Sbjct 258086 TGTCGACGACCTTGAAGGGAAAGTGCTTCATATCGGCCTGGACCTCAGCATCCGCGAACT 258027 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| || ||||| || || || |||||||||| |||||||||||| |||| Sbjct 258026 TGCGACCGATGAGGCGCTTGGCGTCGAAGACTGTGTTTTGGGGGTTCATGGCGACCTGGT 257967 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 ||||||||| ||| || || || || || | | || || || || ||| |||| || | Sbjct 257966 TCTTCGCCGAGTCACCAATGAGGCGCTC---AGTGTCGGTGAAGGCAACGAACGACGGCG 257910 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | ||||| || || ||||| || || || ||||| | |||||||| | ||| || | Sbjct 257909 TTGTTCGGTTACCCTGGTCATTGGCGATGATTTCGATGCGGTCGTCTCTGAAGATACCCA 257850 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGA 8152 |||| || ||||| || || | || |||||||| ||| || Sbjct 257849 CGCAGGAGTACGTGGTACCCAGGTCGATACCGATAGCTGGA 257809 >seq11 Length=416863 Score = 114 bits (126), Expect = 2e-20 Identities = 224/328 (68%), Gaps = 10/328 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || |||||||| || || || ||||| || || || | |||||||| |||| || Sbjct 34580 TCAAAATCTTCCCCCCCTAAATGTGTGTCACCGTTCGTAGACTTGACTTCGAAGA--CCC 34637 Query 7517 CCTTCAATGTTT--AACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 ||||| ||| | | ||| ||||| || || ||||| |||| ||| | | | Sbjct 34638 CCTTCTGGATTTCGAGGACCGAGACATCGAAGGTTCCACCGCCCAAGTCGTAGACCGCAA 34697 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | ||| | ||| | | ||| || |||||||| |||| || || || || || | Sbjct 34698 C-----TAT-GCGGTCGCTTTCCTTGTCTAGACCGTAGGCGAGTGCGGCGGCAGTGGGCT 34751 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || | ||| || |||||| |||| ||||| | ||||| || || ||||| | Sbjct 34752 CGTTGATGACACGCAGGACGTTCAGTCCAGAAATAGAACCGGCATCCTTTGTGGCTTGAC 34811 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||| ||||| || ||||| |||| |||| | || || | Sbjct 34812 GCTGGGAGTCGTTGAAGTAGGCTGGGACGGTGACGACGGCGTTTTTGACATCTTTGCCAA 34871 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 |||| | | ||| | ||||||||||| Sbjct 34872 GATAGGCCTGGGCGGTCTCTTTCATTTT 34899 >seq4 Length=604038 Score = 86.0 bits (94), Expect = 8e-12 Identities = 234/356 (66%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || |||||||||||||| | || || || || ||||| | ||| || |||| ||| Sbjct 587047 TCAAAATCTTCACCACCTAGATGGGTGTCACCGGCGGTGGAGAGGACCTCGAAGACACCA 586988 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | | | || ||||| || || |||||||||| ||| | | || | Sbjct 586987 GAGTCGACAGTGAGGGCGGAGACATCGAAAGTTCCACCACCCAAGTCGTAGACGATGATC 586928 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || || || | | ||| || |||||||| || | ||| || || ||||| || Sbjct 586927 TGGCGCTCCTCCTCGCTCTGCTTGTCCAGACCGTATGCCAAAGCGGCTGCGGTTGGCTCG 586868 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | || ||| || ||| || || || || || || |||| || || || || || Sbjct 586867 TTGACAACACGGAGGACA-TTGAGACCGGCGATGGTGCCCGCGTCCTTTGTGGCGGCACG 586809 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||||||||| || || || |||| | || |||| || | Sbjct 586808 CTGGTTGTCGTTGAAGTAGGCCGGGACAGTCACAACGGCGTTGGAAACCTTCTGTCCCAA 586749 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || || || |||| || ||||| || |||||||| | || || || |||| Sbjct 586748 GTAGGACTCGGCGACTTCCTTCATCTTTTGCAGAACCATGGCGGAGATTTCCTCAG 586693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128473157800