Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq268 167 3e-36 seq50 82.4 9e-11 >seq268 Length=30626 Score = 167 bits (184), Expect = 3e-36 Identities = 244/343 (71%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 109509 CTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCT 109568 |||||| |||||||| || ||||||||| || ||||| |||||| ||| || Sbjct 28855 CTGAGATTGATCGATAAACGCACCACGATCGGCGGCCATTGTGATGATGGTACGTTGACT 28796 Query 109569 AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTG 109628 || |||||||| |||||||| | | |||||| |||||||| |||| |||||||| Sbjct 28795 GATCTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCATCGGGGATGTTGGGAATGTTTTG 28736 Query 109629 AATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTT 109688 |||||| ||||| | | ||| ||| |||||| | | ||||||||||| | || Sbjct 28735 AATAGAACCACCCTCGGCAATGATGCGATTCTTCATATTGTCAGACCAGAGACCCATCTC 28676 Query 109689 TTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGT 109746 |||||| | | || ||| |||||| || ||||| |||||||| ||| Sbjct 28675 GACGAGATCCTTGAGTAGCCATG--GGTTGACGACTTGGAATTCGCCAGCAAGCACACGT 28618 Query 109747 CGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCA 109806 || ||||||||| | ||| || |||||||||||||||||| ||| || ||||| | Sbjct 28617 CGTGAGTAGATGTTCGACGTATATGGTTCGAAACACTCATTGAAGCCCAGAATTTGAGAT 28558 Query 109807 GTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 ||||| || || ||||| || |||| | ||| ||| |||| Sbjct 28557 GTGGAGGCAGTTGGCATTGGGGCCACTAAAAGCGAGTTGCGGA 28515 Score = 154 bits (170), Expect = 2e-32 Identities = 360/537 (67%), Gaps = 17/537 (3%) Strand=Plus/Minus Query 110608 TCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGA 110667 ||||| | ||||||||||||||| |||||||||| || ||||||| ||||| ||| Sbjct 27716 TCAACACGCTTCATGAACAGGTCTGGAATCCACAAGGCGTAGAAAAGATCACGAGCACGC 27657 Query 110668 GCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCAT 110727 |||||||| | ||| ||||| | || ||||| ||| | ||| || | |||||| Sbjct 27656 GCCTCTTCTTTACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAAGATGTCGGCATGCCAT 27597 Query 110728 GGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAG 110781 || || ||||||| |||| | || | |||| || |||||| ||| ||| Sbjct 27596 GGCTCCAGATAGATTGCGAACGCACC---AGGACGCTTGTTTCCACCCTGGTCAACGTAG 27540 Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841 || || || |||| ||| || | ||||||||||| | ||||| |||| || ||||| Sbjct 27539 CGAGCAGTCGCATCGAAAACACGGAGCATAGGAACTAGTCCATTGGATGTGCCGTTTGTT 27480 Query 110842 CCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901 || | ||| || | |||| || ||| ||| | | | |||||| || || || Sbjct 27479 CCTCCAATGTATGATCCAGTGGCTCGGATGCGGTGCACGTTGAGACCAATGCCGCCAGCG 27420 Query 110902 CACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961 ||| || ||||| | |||| || | || ||||| ||||| || || Sbjct 27419 GTCTTTGAGATCATAGCACAAGTTTTGAGAGTGTCGTAGATACCCTCAATGCTGTCCTCC 27360 Query 110962 TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021 || || ||| |||||||| || || | || || |||| || || |||||||| || Sbjct 27359 TTCATGTCAACAAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTGCCTGCATTGAAAAGG 27300 Query 111022 GTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGG 111079 ||||| | ||||| ||| || ||| |||||| | |||||| || | || || | Sbjct 27299 GTAGGCGAAGCATGCGTGA--AGTATTTGCTGGACATGTAGTTGTAAGTCT-GAATG-GC 27244 Query 111080 AGGGT--ACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 || | | || | ||||| || |||| || || ||||||| ||| | ||| || Sbjct 27243 AGCTTCAATGTCCTCTCCGTGGATGCCAACAGCCACACGCATGATCATGTGTTGTGG 27187 >seq50 Length=219468 Score = 82.4 bits (90), Expect = 9e-11 Identities = 215/323 (67%), Gaps = 5/323 (2%) Strand=Plus/Plus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| |||||| ||||||||||| | | || |||| ||| ||| |||||||| || Sbjct 131669 TGTTGAAACCATCCATTTCTGTCAATATTTGATTGAGCGTGCTTTCTCGCTCATCATTTC 131728 Query 11648 -AGGGCATACCACCTGC--CGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 | || | | | ||| | | || |||| ||| || ||||| || ||||| | Sbjct 131729 CACCGCCGAAATTGTTCTTCGATCTCGATTTTCCGATAGCATCGATCTCGTCAATGAAAA 131788 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 |||||| || ||| | || |||| || || || || || | |||| Sbjct 131789 TGATACAAGGCGTGTTCTTTCTCGCAGTAGCGAACAGATCTCGCACGCGGGAAGGACCAA 131848 Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGAC 11823 |||| || |||||||| ||||| | | || |||||||| ||| |||||| |||| Sbjct 131849 CACCAACAAACATCTCCACGAATTCGGAACCACTGACACTGAA-GAACGGAACACCAGAC 131907 Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883 || ||||| | || || || ||||||||||| || ||||| | || | | || | Sbjct 131908 TCGCCAGCTGTTGCCTTCGCAAGTAGAGTCTTACCAGTTCCAGGCGGCCCGGACAAAATG 131967 Query 11884 GCGCCACGGGGGATCTTGGCACC 11906 || || || |||||||| ||||| Sbjct 131968 GCTCCGCGAGGGATCTTAGCACC 131990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971987601000