Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq18 136 9e-27 seq16 120 7e-22 seq13 98.7 2e-15 >seq18 Length=328773 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || |||||||| || || || ||||| |||| | || | || || || Sbjct 244371 AACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCGTCCTC 244312 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || || || || || ||||||||||| || ||||| || ||||| || Sbjct 244311 GAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTG 244252 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || ||||||||||| ||||| || | ||||| ||||| Sbjct 244251 GATCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTAATGGTCTT 244192 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 244191 ACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || ||||| ||||||||| | || | |||||||| | ||||| || Sbjct 244586 GTCGACTCCTTCTGAATGTTGTAATCGCTCAACGTACGTCCATCTTCCAATTGCTTTCCG 244527 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || ||||||||||| ||||| || || ||||| || ||||| |||| Sbjct 244526 GCGAAGATGAGGCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCCTGGATTTTCGTCTTG 244467 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || || || ||| ||| ||||| || |||| ||||| || || | ||| Sbjct 244466 ACGTTGTCGATCGTATCGGAAGATTCAACTTCGAGCGTAATGGTCTTGCCGGTGAGAGTC 244407 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 244406 TTGACGAAAATTTGCAT 244390 Score = 105 bits (116), Expect = 1e-17 Identities = 138/189 (73%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||| || || || || ||||| || | || |||| || || ||| Sbjct 244142 ACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCCTCG 244083 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| | || || ||||| || || || ||||| ||||||||| Sbjct 244082 AGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 244023 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||| || || || ||||||| | | || || || || ||||| | |||| Sbjct 244022 ATCTTGGTCTTCACATTGTCGATGGTGTCGCTGGAC--TCAACCTCGAGGGTGATGGTCT 243965 Query 195110 TTCCTGTCA 195118 | || |||| Sbjct 243964 TGCCAGTCA 243956 >seq16 Length=359911 Score = 120 bits (132), Expect = 7e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| ||||| ||||| ||||| ||||| || ||||| |||| ||||| | Sbjct 61091 AGTCGGAGAACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGATAGAGTGCGG 61150 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| ||||||||||| | ||||| |||||||||||||| ||||| Sbjct 61151 CCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGTTGCTGGTCTGGAGGAATCCCTTCC 61210 Query 195043 TTGTCT 195048 |||||| Sbjct 61211 TTGTCT 61216 >seq13 Length=375566 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| ||| | ||| | ||||| || | ||||| || |||||||| Sbjct 315031 TTCTGGATGTTGTAGTCGCTCAAAGTGCGTCCATCCTCTAATTGCTTCCCGGCGAAGATC 314972 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || ||||| ||||| ||||| |||||||||||||| || || ||||| || || Sbjct 314971 AACCGCTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGTATCTTGGTTTTGACATTATCG 314912 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| || || || ||||| || | |||||||| || | || || ||||| Sbjct 314911 ATGGTGTCTGAGGACTCAACCTCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTGACGAA 314853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473852698015