Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq14 125 9e-23 seq268 122 1e-21 seq171 91.5 2e-12 seq88 89.7 6e-12 >seq14 Length=371612 Score = 125 bits (138), Expect = 9e-23 Identities = 92/107 (86%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||| ||||||||||| ||||| | || |||||| | || |||||| |||| ||||| Sbjct 334463 GCCGCTAACTACCTCGATATCAAAGCCCTTCTCGATGTCGGTTGCAAGACTGTTGCCAAT 334522 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 334523 ATGATCAAGGGCAAGTCTCCAGAGGAGATCCGCAAGACCTTCAACAT 334569 >seq268 Length=30626 Score = 122 bits (134), Expect = 1e-21 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || || | | || || |||||||| || || || || ||||| Sbjct 27552 CTGGTCAACGTAGCGAGCAGTCGCATCGAAAACACGGAGCATAGGAACTAGTCCATTGGA 27493 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| || || | | ||| | || | ||| || | |||| || | || Sbjct 27492 TGTGCCGTTTGTTCCTCCAATGTATGATCCAGTGGCTCGGATGCGGTGCACGTTGAGACC 27433 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||||| || | ||| ||||| | || || |||||| ||||||||||| ||||| Sbjct 27432 AATGCCGCCAGCGGTCTTTGAGATCATAGCACAAGTTTTGAGAGTGTCGTAGATACCCTC 27373 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || |||||||| || || |||||| || | ||||| Sbjct 27372 AATGCTGTCCTCCTTCATGTCAACAAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTGCC 27313 Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324 || ||||| || || |||| Sbjct 27312 TGCATTGAAAAGGGTAGGCG 27293 >seq171 Length=70297 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | |||||| ||||| | |||||||||||| || || ||| Sbjct 54746 CCCTCGTCGCGAGAGATGAGCTCGTTGGAAAAGGTCAAGCCGGGCATGAGACCACGTTTC 54805 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| || |||| |||| || |||||||||||| ||||| ||||| || Sbjct 54806 TTGAGCCAGAAAATGGATGCGAAAGCACCACTGAAAAAGATGCCTTCGACAGCGGCGAAT 54865 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| || ||| || || || || || | | ||||||||||| |||||| Sbjct 54866 GCGACTAGGCGCGACGCGAA--CGTAGA-ATTGTCATCGCAGATCCACTTCAATGCCCAG 54922 Query 869360 TCGGCCTTTTT 869370 || ||||| || Sbjct 54923 TCAGCCTTCTT 54933 Score = 91.5 bits (100), Expect = 2e-12 Identities = 171/247 (69%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| |||||||||||||| ||||| ||| | | |||| || ||| Sbjct 55078 GAGTGAATATTCTCCATGGCGATCTGGAAACCGTAGAAGCATCGAGCTTCTGGAACCTGG 55137 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || || |||| || || |||||||| || |||||||| || ||||| Sbjct 55138 ACTTCATTGCTGAATCGCTCGAGAAGGTTCTCATTGACAATGCCGTCCGATGCTGCGAAG 55197 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAG--T 869807 || || |||| ||| ||| ||| ||| ||||||||| ||| ||| |||| | Sbjct 55198 AATGCGAGGATGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGGCGGTTGTTCCAGTCT 55257 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 ||| || | ||| || | ||| ||||| ||||||| |||||| |||||| | Sbjct 55258 GGA--ACATCTTTGGAGAGATCAATCTCTTCGGCAGTCCAGAATGAGGCCATGGCCTTCT 55315 Query 869868 TGTACAT 869874 ||||||| Sbjct 55316 TGTACAT 55322 >seq88 Length=134390 Score = 89.7 bits (98), Expect = 6e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1574058 CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCG 1574117 || ||||| || ||||| ||| | |||||||||||||| |||||| || | || || | Sbjct 44079 CTCCCGCCTGGTCGCCAAAAGCTCATCATCCTCGACGAAGCCGACAGCATGACCTCCGGT 44138 Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177 || ||||| |||||||| |||||||| | || || ||| ||||| || || | Sbjct 44139 GCTCAGCAAGCCCTGCGCCGAACCATGGAGATATACTCCTCCACTACGCGTTTCGCATTC 44198 Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 || |||||| ||| | |||||||| | || ||| || || |||||||| || Sbjct 44199 GCTTGCAACCAGTCCAATAAAATCATCGAGCCTCTACAATCACGTTGTGCCATTCTTCG 44257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107094474747765