Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq268 131 2e-25 seq18 109 5e-19 seq13 93.3 4e-14 >seq268 Length=30626 Score = 131 bits (144), Expect = 2e-25 Identities = 462/711 (65%), Gaps = 17/711 (2%) Strand=Plus/Minus Query 139306 TACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTG 139365 ||||||||||| || | ||| || || || || | || | ||| | | |||| | Sbjct 27809 TACTTTTCGTATAGGGCCTCGTATTCGTCGCCATATACTTCGGCAAGGCCAGGGCACTCG 27750 Query 139366 TCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGA 139425 | ||| ||||| |||| |||| || ||||| | || ||| |||||||||| || ||| Sbjct 27749 TGAGGGCACATCAGCGTCCATTCGGCGTTCTGTTCAACACGCTTCATGAACAGGTCTGGA 27690 Query 139426 ATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC 139485 |||||||| ||| | | | ||| || || | ||||| ||| ||| | || Sbjct 27689 ATCCACAAGGCGTAGAAAAGATCACGAGCACGCGCCTCTTCTTTACCGTGGTTCTTTCTC 27630 Query 139486 ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCT 139545 | || | | | || | ||| || |||||||| ||||||||||| || | || || Sbjct 27629 AGGTCCAACCAGTTGAAGATGTCGGCATGCCATGGCTCCAGATAGATTGCGAACGCACCA 27570 Query 139546 TTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATC 139602 || ||| ||||| || || |||| || ||| || ||| || || | ||| Sbjct 27569 GGACGCTTGTTTCCACCCTGGTCAACGTAGCGAGCAGTCGCATCGAAAACACGGAGCATA 27510 Query 139603 GGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGA--GCTCGGA 139660 || | || || | | ||| ||||| || | | ||| || | | ||||||| Sbjct 27509 GGAACTAGTCCATTGGATGTGCCGTTTGTTCCTCCAATGTA--TGATCCAGTGGCTCGGA 27452 Query 139661 CGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTA 139720 | || || |||| || || ||||| | || || || | | | ||| | Sbjct 27451 TGCGGTGCACGTTGAGACCAATGCCGCCAGCGGTCTTTGAGATCATAGCACAAGTTTTGA 27392 Query 139721 ATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAA 139780 || ||||| ||||| |||||||| |||| ||| || |||||||| || |||| Sbjct 27391 GAGTGTCGTAGATACCCTCAATGCTGTCCTCCTTCATGTCAACAAGAAAGCAGGAGGAAA 27332 Query 139781 GTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGT 139839 |||||||| | ||||| || || || ||||| || |||||||| ||||| Sbjct 27331 GTTGCGGTTGAGGTGTGCCTGCATTGAAAAGGGTAGGCGAAGCATGCGTGAAGTATTTG- 27273 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGC-GCTCACAATATCCCTTCCGTGGATACCGAC 139898 | ||||| | | ||| || | ||||| ||| |||| ||| ||||||||| || || Sbjct 27272 CTGGACATGTAGTTGTAAGTCTGAATGGCAGCT-TCAATGTCCTCTCCGTGGATGCCAAC 27214 Query 139899 AGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG 139958 || || ||||| | ||| ||||| || || || ||| || || || || ||| Sbjct 27213 AGCCACACGCATGATCATGTGTTGTGGACGCTCAGCGACCTTGC---CGCTTATTCGCAG 27157 Query 139959 -ATAACCGTT--CTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | || | ||| || |||||| |||||||||| ||||||||||| Sbjct 27156 TAGGTACGATCGCTCAAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAATC 27106 >seq18 Length=328773 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || || || ||||| || || ||| |||||| | || | || || Sbjct 243958 ACTGGCAAGACCATCACCCTCGAGGTTGAGTCCAGCGACACCATCGACAATGTGAAGACC 244017 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| |||||||| || || || || || ||||||||||| ||||| ||| Sbjct 244018 AAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATCTTCGCCGGCAAA 244077 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| ||| | | || || || ||||| || |||||||| ||||| ||| Sbjct 244078 CAGCTCGAGGACGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAATCCACACTCCAC 244137 Score = 105 bits (116), Expect = 6e-18 Identities = 169/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| || || |||||||||||||| ||| | || Sbjct 244390 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATTACGCTCGAAGTTGAATCTTCC 244449 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || || ||| ||||| ||||| || || || || || || || Sbjct 244450 GATACGATCGACAACGTCAAGACGAAA-ATCCAGGACAAGGAGGGTATTCCACCAGACCA 244508 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || | ||||| ||||| || || |||| ||| | | || ||||| || Sbjct 244509 ACAGCGCCTCATCTTCGCCGGAAAGCAATTGGAAGATGGACGTACGTTGAGCGATTACAA 244568 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941 |||||| ||||| ||||| | ||||||||| | || | || || ||| |||| ||| Sbjct 244569 CATTCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGCGGC--AACTAAGC 244625 Score = 100 bits (110), Expect = 3e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || ||||| || ||||| | || || || || | Sbjct 244162 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATTACCTTGGAGGTGGAGTCCTCG 244221 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || |||||||| ||||| || || || || || || || Sbjct 244222 GACACCATCGACAACGTCAAGAC-CAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 244280 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGATTA 24879 ||| || |||| |||||||| || ||||| ||||| ||| ||| |||| || || Sbjct 244281 ACAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGACGGTCG---CACATTGTCCGACTA 244337 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || |||||||| | || | ||||| || Sbjct 244338 CAACATCCAGAAGGAGTCCACGCTGCACTTGGTTCTACGTCTCCGCGGTGG 244388 >seq13 Length=375566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || ||||| || || || || || || || || || || | ||||| | || | Sbjct 314859 AAGACCCTAACGGGAAAGACCATAACTCTTGAGGTTGAGTCCTCAGACACCATCGATAAT 314918 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| ||||| ||||||||||||||||| || || |||||||| || |||||||| Sbjct 314919 GTCAAAACCAAGATACAAGACAAAGAAGGAATTCCACCAGATCAACAGCGGTTGATCTTC 314978 Query 24839 GCCGGGAAACAGCTGGAGGAT 24859 |||||||| || | |||||| Sbjct 314979 GCCGGGAAGCAATTAGAGGAT 314999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894535072600