Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq14 116 6e-20 seq268 93.3 7e-13 seq171 86.0 1e-10 seq60 86.0 1e-10 >seq14 Length=371612 Score = 116 bits (128), Expect = 6e-20 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||||| ||||||||||| ||||| |||| |||||| | || |||||||| || ||||| Sbjct 334463 GCCGCTAACTACCTCGATATCAAAGCCCTTCTCGATGTCGGTTGCAAGACTGTTGCCAAT 334522 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | |||||||||||||| || ||||| |||||||||||||| ||||| Sbjct 334523 ATGATCAAGGGCAAGTCTCCAGAGGAGATCCGCAAGACCTTCAACAT 334569 >seq268 Length=30626 Score = 93.3 bits (102), Expect = 7e-13 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 2071801 AGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGC-CAGT-CACCACGCGGC 2071858 ||||| || |||| ||||| | |||| ||| ||| || | || || ||||| | Sbjct 27764 AGGCCAGGGCACTCGTGAGGGCACATCAGCGTCCATTCGGCGTTCTGTTCAACACGCTTC 27705 Query 2071859 GCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCT 2071918 || |||||||| |||||| | |||| || ||||| || || || ||| || | Sbjct 27704 --ATGAACAGGTCTGGAATCCACAAGGCGTAGAAAAGATCACGAGCACGCGCCTCTTCTT 27647 Query 2071919 TGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGT 2071978 | |||||||||||| ||||||| | ||||| || || |||||| ||||| |||||||| | Sbjct 27646 TACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAAGATGTCGGCATGCCATGGCTCCAGAT 27587 Query 2071979 AG 2071980 || Sbjct 27586 AG 27585 >seq171 Length=70297 Score = 86.0 bits (94), Expect = 1e-10 Identities = 134/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||| | |||||| |||| | |||||||||||| || || ||| Sbjct 54746 CCCTCGTCGCGAGAGATGAGCTCGTTGGAAAAGGTCAAGCCGGGCATGAGACCACGTTTC 54805 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| || |||| |||| || |||||||||||| ||||| ||||| || Sbjct 54806 TTGAGCCAGAAAATGGATGCGAAAGCACCACTGAAAAAGATGCCTTCGACAGCGGCGAAT 54865 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || ||| || || || | || | | ||||||||||| ||||| Sbjct 54866 GCGACTAGGCGCGACGCGAACGTAGAATTG---TCATCGCAGATCCACTTCAATGCCCAG 54922 Query 794521 TCTGCCTTTTT 794531 || ||||| || Sbjct 54923 TCAGCCTTCTT 54933 >seq60 Length=186276 Score = 86.0 bits (94), Expect = 1e-10 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 |||||| || ||| ||| |||| |||||||||||||| ||||||| ||| ||||| | Sbjct 55709 GGCCTCAGTTGCGACGCGCTCGAAGATGTCGTTGACAAATGAGTTCAAGATGGACATGGC 55650 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||| ||||| ||||||||||| || Sbjct 55649 ACGGTTGGAGATACCAGTGTCTGGGTGGACCTGCTTGAGGAC 55608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916188425864255