Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18 107 1e-18 seq13 93.3 3e-14 seq16 89.7 3e-13 >seq18 Length=328773 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || | |||| | || Sbjct 244373 AGAACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCGTCC 244314 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| || ||||| || || |||||| | || | ||||||||||| Sbjct 244313 TCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCC 244254 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| |||||| Sbjct 244253 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTAATGGTC 244194 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | |||||| || ||||||||||| Sbjct 244193 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 244162 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| || || | | || |||| Sbjct 244601 AGCACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCTCAACGTACGTCCATCT 244542 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||||||||| || || || |||||| | || | ||||||||||| Sbjct 244541 TCCAATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCC 244482 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | |||| || | || || || | || |||||| Sbjct 244481 TGGATTTTCGTCTTGACGTTGTCGATCGTATCGGAAGATTCAACTTCGAGCGTAATGGTC 244422 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || || || ||||| Sbjct 244421 TTGCCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/193 (71%), Gaps = 10/193 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| |||||||| ||||| |||||||| ||| | || | || Sbjct 244145 AGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCGTCC 244086 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||||| || |||||||| | || | || |||||||| Sbjct 244085 TCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC- 244027 Query 34886 TTTATTTTTTGT-TTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 || | | || || || || || | ||||| || ||| ||| || || | ||| | Sbjct 244026 TTGAATCTTGGTCTTCAC--AT--TGTCGATGGTGTCGCTGGACTCAACCTCGAGGGTGA 243971 Query 34941 TGGTCTTTCCCGT 34953 ||||||| || || Sbjct 243970 TGGTCTTGCCAGT 243958 >seq13 Length=375566 Score = 93.3 bits (102), Expect = 3e-14 Identities = 133/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| | |||| |||| || | |||||| |||||||||| Sbjct 315033 CCTTCTGGATGTTGTAGTCGCTCAAAGTGCGTCCATCCTCTAATTGCTTCCCGGCGAAGA 314974 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || || || ||| | || | || || ||||| | ||| || |||||| || Sbjct 314973 TCAACCGCTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGTATCTTGGTTTTGAC--AT- 314917 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 ||||||| || || ||| || |||| ||||||||||||||||| |||||||| Sbjct 314916 -TATCGATGGTGTCTGAGGACTCAACCTCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTG 314858 Query 34964 ACAAA 34968 || || Sbjct 314857 ACGAA 314853 >seq16 Length=359911 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| ||||| |||| | || || || |||||||| ||||| Sbjct 61117 CTCCTTTTGGATGTTGTAGTCGGATAGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCGAA 61176 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| |||||||||||| | || | ||| |||||||| Sbjct 61177 GATCAAGCGTTGCTGGTCTGGAGGAATCCCTTCCTTGTC 61215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690636687355