Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq171 116 4e-21 seq18 93.3 4e-14 >seq171 Length=70297 Score = 116 bits (128), Expect = 4e-21 Identities = 340/515 (66%), Gaps = 9/515 (2%) Strand=Plus/Minus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATC-GAGAGCGAGACCGC 46816 || || ||| ||||||| ||||| | ||||| ||||||||||| | || || | | Sbjct 54948 GTCCCCTGCATTCGCAAGAAGGCTGACTGGGCATTGAAGTGGATCTGCGAT-GACAATTC 54890 Query 46817 CACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAG 46876 ||| | || |||| | || |||||||| ||||||||| | ||||| || Sbjct 54889 TACGTTCGCGTCGCGCCTAGTCGCATTCGCCGCTGTCGAAGGCATCTTTTTCAGTGGTGC 54830 Query 46877 TTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAA 46936 ||| || ||||||| | | || | || | ||||| ||| |||| || || Sbjct 54829 TTTCGCATCCATTTTCTGGCTCAAGAAACGTGGTCTCATGCCCGGCTTGACCTTTTCCAA 54770 Query 46937 CGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGAC 46996 |||| | ||||| |||||||| ||| | ||||| |||||||| |||||| || | | Sbjct 54769 CGAGCTCATCTCTCGCGACGAGGGAATGCACACCGACTTTGCCTGTCTCCTTTTCT---C 54713 Query 46997 GCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGTGAG 47056 | | || |||| | || | ||| ||| | | |||||| || Sbjct 54712 ACAACTCAACAAGAAGCCTGCTCCTGAAGCTGTCCGCGCCATCATCACGGAGGCAGTTCA 54653 Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 || || | || || || | | ||| || || | |||| |||||||| || Sbjct 54652 AATTGAGCAAGAATTCTTGAGCGAGGCACTACCATGCAGACTGCTCGGCATGAATTCAGG 54593 Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGT-GCAGCTCGGACAAC 47175 | |||||| |||| ||||||||||| || |||||||| ||| | ||| ||||| ||| Sbjct 54592 GCTCATGTGCCAATACATTGAGTTTGTCGCTGATCGTCTCTTGCTTGCA-CTCGG-CAAT 54535 Query 47176 CGAAATATTT-TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGC 47234 || | | ||||||| ||||| || || || ||| | ||||| || |||| || Sbjct 54534 GTCAAGGTCTATAATGCTGTGAATCCCTTCGACTTCATGGAGAACATCTCTCTCGCCGGA 54475 Query 47235 AAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || || ||||| ||||||||||| ||||| || || Sbjct 54474 AAGACAAATTTCTTCGAGAAACGTGTCGGTGATTA 54440 >seq18 Length=328773 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || ||||||||||| ||||||| ||||| |||||| Sbjct 244598 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAATCGCTCAACGTACGTCCATCTTCC 244539 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || |||| |||| || |||||||| ||||| || || || || || || Sbjct 244538 AATTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCCTGG 244479 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||||||| | || ||||||| ||| | || || Sbjct 244478 ATTTTCGTCTTGACGTTGTCGATCGTATCGGAAGATTCAACTTCGAGCGTAATGGTCTTG 244419 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || | |||||| ||||| Sbjct 244418 CCGGTGAGAGTCTTGACGAAAATTTGCAT 244390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607953086200