Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq268 161 1e-34 >seq268 Length=30626 Score = 161 bits (178), Expect = 1e-34 Identities = 359/535 (67%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 111616 ||||| ||||||||||| |||||||||||||||| || | || ||||| | | || Sbjct 27716 TCAACACGCTTCATGAACAGGTCTGGAATCCACAAGGCGTAGAAAAGATCACGAGCACGC 27657 Query 111617 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 111676 |||||||| | ||| ||||| || | || | | | | ||| || || |||||| Sbjct 27656 GCCTCTTCTTTACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAAGATGTCGGCATGCCAT 27597 Query 111677 GGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAG 111730 ||||| ||||||| ||||| | || ||||| ||| | || | || ||| Sbjct 27596 GGCTCCAGATAGATTGCGAACGCACC---AGGACGCTTGTTTCCACCCTGGTCAACGTAG 27540 Query 111731 CGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTC 111790 || || || || | || || || ||||| |||| | |||| ||| || ||||| Sbjct 27539 CGAGCAGTCGCATCGAAAACACGGAGCATAGGAACTAGTCCATTGGATGTGCCGTTTGTT 27480 Query 111791 CCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCC 111850 || | ||| ||| | |||||| | || | || | ||||| || ||||| Sbjct 27479 CCTCCAATGTATGATCCAGTGGCTCGGATGCGGTGCACGTTGAGACCAATGCCGCCAGCG 27420 Query 111851 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 111910 ||||||||| ||||| | ||||| | |||||||| | || ||||||| Sbjct 27419 GTCTTTGAGATCATAGCACAAGTTTTGAGAGTGTCGTAGATACCCTCAATGCTGTCCTCC 27360 Query 111911 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 111970 || || | | ||| ||||| ||| | |||||| ||||| || |||||||| ||| Sbjct 27359 TTCATGTCAACAAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTGCCTGCATTGAAAAGG 27300 Query 111971 GTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAG 112028 || || | || || |||| || ||| |||||| | || ||| |||| | | ||| Sbjct 27299 GTAGGCGAAGCATGCGTGAA-GTA-TTTGCTGGACATGTAGTTGTAAGTCTGAATGGCAG 27242 Query 112029 AATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||||||| || ||||||||||| | || || ||||||| ||||| ||||| Sbjct 27241 CTTCAATGTCCTCTCCGTGGATGCCAACAGCCACACGCATGATCATGTGTTGTGG 27187 Score = 132 bits (146), Expect = 6e-26 Identities = 702/1107 (63%), Gaps = 22/1107 (2%) Strand=Plus/Minus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| ||| | ||| | | ||| ||||||||||| || ||| Sbjct 28995 TCAACAGTGAACTGAATAGGTGCTGAGGCAGCCATGGTTCGAAGATAGTACATTCCAGTC 28936 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTT 110443 || | || |||||| | | |||||| || | || ||| ||| || || Sbjct 28935 TTCAAGCCCAATTTCCAGCCAGCAAAATGCATGGACGTGATTTTGCCCATGGTAGGCTCC 28876 Query 110444 TCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCCC-CGTTGTGCCGCCAT 110502 | |||| | ||||| || ||| ||| || || || ||| || || | || ||||| Sbjct 28875 TTCATGTGAATGTTCAAGCTCTGAGATTGATCGATAAA-CGCACCACGATCGGCGGCCAT 28817 Query 110503 ATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCAT 110561 |||| | | | || | | ||||| || || |||||| |||||| |||| Sbjct 28816 TGTGATGATGGTACGTTGACTGA-TCTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAT 28758 Query 110562 CTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATAT 110621 | ||||| | | || || || || ||||| ||| | | ||| ||| |||||||| Sbjct 28757 CGGGGATGTTGGGAATGTTTTGAATAGAACCACCCTCGGCAATGATGCGATTCTTCATAT 28698 Query 110622 CCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAA 110681 | ||||||||||| |||| ||| || |||| || |||||| | | Sbjct 28697 TGTCAGACCAGAGACCCATCTCGACGAGATCCTTGAGTAGCCATGGGTTGACGACTTGGA 28638 Query 110682 ACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCAT 110741 | || || || || | || ||||||||| | || |||||||| || || |||| Sbjct 28637 ATTCGCCAGCAAGCACACGTCGTGAGTAGATGTTCGACGTATATGGTTCGAAACACTCAT 28578 Query 110742 TATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTAC 110801 | |||| ||||| | |||||||| ||||||||||| |||| ||||| ||| | Sbjct 28577 TGAAGCCCAGAATTTGAGATGTGGAGGCAGTTGGCATTGGGGCCACTAAAAGCGAGTTGC 28518 Query 110802 GAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGT 110859 | | || | || || || ||||||| ||||||||| || || || |||| Sbjct 28517 GGACGCCGTGCTTTTTTATATCAGCCTTGAGCGAATCCCAGTCCCAGA-GATCTGTTGGT 28459 Query 110860 TTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGT 110919 | || |||| |||||||| | || || | ||||| || | ||||| |||| ||| Sbjct 28458 GTGACGTTCC-ACATGTCATATTGTAGGATACCTTGCGATACTGGAGAGCCCTTGTAGGA 28400 Query 110920 TTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACAT 110979 || || | ||| | ||| || | || ||| | || || ||||| || || Sbjct 28399 TTGGTACGTACCCTCTTCTTGTGCAAGTTTGCAGGAAGAGGTCAAGGCAGCGTGGTAAAT 28340 Query 110980 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG-----CGTAG 111034 |||||| ||||| || ||| | || ||| |||||| || || || | || || Sbjct 28339 GGTTTCGAAGATTTGAATATTGAGCTTCTTTGCTTCAGGAGACTCGAAAGGCAGACGAAG 28280 Query 111035 CGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 111094 || | ||| |||| || ||||| || || || | || | || | || || Sbjct 28279 CGCGAGGAAAG-----CATCAGCAAGACCCTGTACGCCAACTCCGACTGGACGATGACGG 28225 Query 111095 ATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGA 111154 || || || ||| ||||| ||| ||||||| || || | Sbjct 28224 GAGTTGCTGTTGTATGCTTCAGGAACAGGATAGTGATTGACATCAATGA-TCTTATTCAA 28166 Query 111155 TTTTTGG-TAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGC-GAGTCT 111212 || || | ||| ||| || | ||| || | || | |||| | || | || | Sbjct 28165 GTTGCGGATGACAGTCTGGGTAACTTCGTGCAACTTCTGGAAATCGTAGACGCCGCGT-T 28107 Query 111213 CTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 111272 | | ||| | | ||||| || || |||||||| ||||| ||||| |||||| Sbjct 28106 GGACGTCAACAAAGGTCGGAAGTGCCATAGATGCCAAGTTGCATACAGCAACCTCATCTG 28047 Query 111273 TATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCT 111332 | | |||||| | || || || || || || || || ||| || |||| |||| Sbjct 28046 GTGCAGAGTACTCAATGATCTCGGTGCACAAATTAGAGCTGCGAATGGTTCCCAGGTTCT 27987 Query 111333 TTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCG 111392 | ||||| |||||| ||||| || || |||||||||||| | || | || ||||| | Sbjct 27986 TCTGGTTGCTCTTCCGATTGCAGGCGTCTTTGTAGAGCATGAAAGGATTGCCAGTCTCGG 27927 Query 111393 TCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||| | || ||||| || | ||||| Sbjct 27926 TCTGGGCTTGTAGAATGGCATACCAAA 27900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027721532000