Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq268 123 3e-23 >seq268 Length=30626 Score = 123 bits (136), Expect = 3e-23 Identities = 388/590 (66%), Gaps = 16/590 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| ||| | ||| | | ||| || |||||||| || ||||| | | Sbjct 28988 TGAACTGAATAGGTGCTGAGGCAGCCATGGTTCGAAGATAGTACATTCCAGTCTTCAAGC 28929 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || |||||| || | |||||| || | | ||| | ||| || | |||| Sbjct 28928 CCAATTTCCAGCCAGCAAAATGCATGGACGTGATTTTGCCCATGGTAGGCTCCTTCATGT 28869 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | ||||| || || ||||||||||| || || ||||| || ||||| || | Sbjct 28868 GAATGTTCAAGCTCTGAGATTGATCGATAAACGCACCACGATCGGCGGCCATTGTGATGA 28809 Query 117985 CA-TCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 | | | || ||| ||||| || ||| ||||||| ||| || ||||| ||||| Sbjct 28808 TGGTACGTTGACT-GATCTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCATCGGGGATG 28750 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || ||||| || || |||||| | | ||| ||| |||||||| | ||| Sbjct 28749 TTGGGAATGTTTTGAATAGAACCACCCTCGGCAATGATGCGATTCTTCATATTGTCAGAC 28690 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCAC 118161 |||||||| |||| |||||||| | || ||| ||||| || || || | Sbjct 28689 CAGAGACCCATCTCGACGAGATCCTTGAGTAGCCATG--GGTTGACGACTTGGAATTCGC 28632 Query 118162 CCGCGAGGGTGCGTC-TCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 118220 | || || |||| | || ||||| || | ||| ||||| || || ||||||||| Sbjct 28631 CAGCAAGCACACGTCGTGAG-TAGATGTTCGACGTATATGGTTCGAAACACTCATTGAAG 28573 Query 118221 CCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGA 118280 |||| ||||| | ||||||||| || ||||| || |||| | ||| ||| |||| Sbjct 28572 CCCAGAATTTGAGATGTGGAGGCAGTTGGCATTGGGGCCACTAAAAGCGAGTTGCGGACG 28513 Query 118281 CC---CTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCT-TTGTCTC 118336 || ||||| | || ||||||| | |||||||| || || || ||| Sbjct 28512 CCGTGCTTTT---TTATATCAGCCTTGAGCGAATCCCAGTCCCAG-AGATCTGTTGGTGT 28457 Query 118337 CCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCT 118386 | | |||||| ||| | || ||||||||||| || |||| || |||| Sbjct 28456 GACGTTCCACATGTCATATTGTAGGATACCTTGCGATACTGGAGAGCCCT 28407 Score = 111 bits (122), Expect = 2e-19 Identities = 348/535 (65%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 119031 TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA 119090 ||||| ||||||||||| |||||||| ||||| | || |||| ||||| ||| || Sbjct 27716 TCAACACGCTTCATGAACAGGTCTGGAATCCACAAGGCGTAGAAAAGATCACGAGCACGC 27657 Query 119091 GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCAC 119150 || ||||| | || || || | || ||||| ||| | ||| || || ||||| Sbjct 27656 GCCTCTTCTTTACCGTGGTTCTTTCTCAGGTCCAACCAGTTGAAGATGTCGGCATGCCAT 27597 Query 119151 GGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATAC 119204 || ||||| || | |||| || | | |||| ||| |||||| || || Sbjct 27596 GGCTCCAGATAGATTGCGA---ACGCACCAGGACGCTTGTTTCCACCCTGGTCAACGTAG 27540 Query 119205 CTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTC 119264 | ||||| || | || ||||| ||||| |||| | |||| |||| ||| ||||| Sbjct 27539 CGAGCAGTCGCATCGAAAACACGGAGCATAGGAACTAGTCCATTGGATGTGCCGTTTGTT 27480 Query 119265 CCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCC 119324 || | ||| || | |||||| || ||| | || | |||||| || || || Sbjct 27479 CCTCCAATGTATGATCCAGTGGCTCGGATGCGGTGCACGTTGAGACCAATGCCGCCAGCG 27420 Query 119325 CACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCC 119384 ||||||||| || || ||||| || ||||||| || || || ||| || Sbjct 27419 GTCTTTGAGATCATAGCACAAGTTTTGAGAGTGTCGTAGATACCCTCAATGCTGTCCTCC 27360 Query 119385 TTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGA 119444 || | | | || |||||| || | ||| || ||||| || || ||||| || Sbjct 27359 TTCATGTCAACAAGAAAGCAGGAGGAAAGTTGCGGTTGAGGTGTGCCTGCATTGAAAAGG 27300 Query 119445 GTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGG 119502 || || | || || |||| || ||| |||||| | || ||| |||| | | | | Sbjct 27299 GTAGGCGAAGCATGCGTGAA-GTA-TTTGCTGGACATGTAGTTGTAAGTCTGAATGGCAG 27242 Query 119503 CGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 | |||||| || ||||| || || | | || ||||| | ||||| ||| || Sbjct 27241 CTTCAATGTCCTCTCCGTGGATGCCAACAGCCACACGCATGATCATGTGTTGTGG 27187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430986910200