Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq23 154 4e-32 seq13 98.7 3e-15 seq18 93.3 1e-13 >seq23 Length=300837 Score = 154 bits (170), Expect = 4e-32 Identities = 489/746 (66%), Gaps = 24/746 (3%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || ||||| | ||||| || || || || || | | | | | | || || Sbjct 257813 GCTATCGGTATCGACCTGGGTACCACGTACTCCTGCGTGGGTATCTTCAGAGACGACCGC 257872 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | ||||| || || ||||| || |||||| |||||||||| || | |||||| || ||| Sbjct 257873 ATCGAAATCATCGCCAATGACCAGGGTAACCGAACAACGCCGTCGTTCGTTGCCTTCACC 257932 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || |||||||| | |||||||| || || || || || | || || || |||| Sbjct 257933 GACACTGAGCGCCTCATTGGTGACTCGGCGAAGAACCAGGTCGCCATGAACCCCCAAAAC 257992 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACA 349432 || || || || || ||||| || || ||| | ||||| | |||| || Sbjct 257993 ACAGTCTTCGACGCCAAGCGCCTCATCGGTCGCAAGTTCGCGGATGCTGAGG--TC---- 258046 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || | ||| | || || ||||| || | || || | | ||| || | || || || Sbjct 258047 CAGGCCGATATGAAGCACTTTCCCTTCAAGGTCGT-CGACAAG--GGCGGCAAGCCTGTT 258103 Query 349493 ATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCA 349549 | || | || | || || || || || || ||| || | |||||||| || || Sbjct 258104 GTCCAGATCGAGTTCAAGGGCGAGACTAAGAC---TTTCACGCCAGAAGAAATCTCTTCG 258160 Query 349550 ATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGAT 349609 ||| | || || ||| || | ||||| |||| | || | || || | | Sbjct 258161 ATGATCTTGACCAAGATGCGAGAGACAGCTGAGTCATACCTCGGAGGCACCGTCAACAAC 258220 Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || | || || |||||||| || || || | || || || || || || || Sbjct 258221 GCCGTCGTCACAGTCCCAGCCTACTTCAACGACTCGCAACGACAAGCCACCAAGGACGCC 258280 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||| || || | ||||| || | || || || || || || || || || ||| Sbjct 258281 GGTCTCATCGCCGGCCTCAATGTCCTCCGTATTATCAACGAGCCAACCGCCGCCGCCATT 258340 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCA-AGaaaaaaaTATTCTTATTTTTGATTTAGG 349788 || || || || || || | | | ||| ||| |||| | || ||||| || | || Sbjct 258341 GCCTACGGTCTCGACAAGAAG-GCCACCGGAGAGCGAAATGTCCTCATTTTCGACCTCGG 258399 Query 349789 TGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGC 349848 ||| || || || ||||| || || || || | |||||||| || || ||||| || | Sbjct 258400 TGGCGGAACCTTCGATGTCTCCCTCCTCACCATCGAAGAGGGCATCTTCGAAGTCAAGTC 258459 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTT 349908 || || ||||| || ||||| || || ||||||||||| |||||||| || || || Sbjct 258460 TACCGCCGGTGACACGCATCTCGGGGGTGAAGATTTTGACAATCGTCTTGTGAACCACTT 258519 Query 349909 TGTTAAAGAATTTAAGCGTCAAGCTA 349934 || || || || ||||| |||| || Sbjct 258520 CGTGAACGAGTTCAAGCG-CAAGGTA 258544 Score = 105 bits (116), Expect = 2e-17 Identities = 239/356 (67%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGC 350254 || |||||||| || |||||||| || | || || | | ||||| || || || || Sbjct 258860 GTCGGTGGTTCCACCCGTATTCCCAAGATCCAGAAGCTCGTCTCTGACTTCTTCAACGGG 258919 Query 350255 AAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAG 350314 || || || | || || || || ||||| ||||||||||||||||| || |||||| Sbjct 258920 AAGGAGCCAAACAAGTCCATCAACCCTGATGAGGCTGTTGCATATGGTGCCGCCGTTCAG 258979 Query 350315 GCATCTATTTTATCTGGAAATA-----AG-AGTTCTAAAATTGATGATCTATTACTACTA 350368 || ||||| | ||||| ||| || | |||| | ||| |||| || ||||| Sbjct 258980 GCCGCTATTCTCTCTGGTGATACCTCCAGCAAGTCTACCAATGA-GATC--TTGCTACTT 259036 Query 350369 GATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATT 350428 || || | || || || | || | || ||| | |||| || ||||||| ||| || Sbjct 259037 GACGTCGCCCCGCTGTCCATGGGTATCGAGACTGCCGGTGGTGTCATGACTGCTCTCATC 259096 Query 350429 CCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAAT 350488 | || | || | || || || |||||| || || || || ||| | || || Sbjct 259097 AAGCGCAACACCACCATCCCCACCAAGAAGTCCGAAGTCTTCTCAACCTTTTCCGACAAC 259156 Query 350489 CAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAA 350544 || |||| || || || ||||| ||||| |||||||| | || ||||| || Sbjct 259157 CAACCAGGCGTTCTCATCCAGGTATTCGAAGGCGAACGTGCGAGGACAAAAGACAA 259212 >seq13 Length=375566 Score = 98.7 bits (108), Expect = 3e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || ||||| || | ||| || || || ||||| | || || ||||| || ||| Sbjct 315010 AAAGTGCGTCCATCCTCTAATTGCTTCCCGGCGAAGATCAACCGCTGTTGATCTGGTGGA 314951 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||||||||| || || || || | ||| |||||||| || | || || | ||||| Sbjct 314950 ATTCCTTCTTTGTCTTGTATCTTGGTTTTGACATTATCGATGGTGTCTGAGGACTCAACC 314891 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 ||||| || | |||||||| ||||| || || || ||| Sbjct 314890 TCAAGAGTTATGGTCTTTCCCGTTAGGGTCTTGACGAAA 314852 >seq18 Length=328773 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || || || || || || || || || Sbjct 244164 CATACCACCACGAAGGCGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTC 244105 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || || || ||||| || || ||||| | ||| ||||| || || Sbjct 244104 CGAGAGGGTTCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCCGG 244045 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 || |||||||| || || ||||| || | || ||||| || || | || | ||| | Sbjct 244044 TGGGATTCCTTCCTTGTCTTGAATCTTGGTCTTCACATTGTCGATGGTGTC-GCTGGACT 243986 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||| || || || | ||||| || || Sbjct 243985 CAACCTCGAGGGTGATGGTCTTGCCAGT 243958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243819262635